Basic Information:

  VIRBase ID:  

VHID00313171

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART6-5p:  MIMAT0003414          NDUFA4:  NM_002489     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART6-5p	NDUFA4
miRBase Accession/Entrez ID	MIMAT0003414	4697
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CI-9k//CI-MLRQ//COXFA4//MC4DN21//MLRQ

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	NDUFA4	chr7:10977201(-) A-I      intronic chr7:10977098(-) A-I      intronic chr7:10977066(-) A-I      intronic chr7:10977137(-) A-I      intronic chr7:10976982(-) A-I      intronic chr7:10976956(-) A-I      intronic chr7:10976978(-) A-I      intronic chr7:10976594(-) A-I      intronic chr7:10976445(-) A-I      intronic chr7:10977205(-) A-I      intronic chr7:10976655(-) A-I      intronic chr7:10977080(-) A-I      intronic chr7:10976657(-) A-I      intronic chr7:10977021(-) A-I      intronic chr7:10977006(-) A-I      intronic chr7:10976587(-) A-I      intronic chr7:10976459(-) A-I      intronic chr7:10977007(-) A-I      intronic chr7:10976524(-) A-I      intronic chr7:10977018(-) A-I      intronic chr7:10976500(-) A-I      intronic chr7:10977166(-) A-I      intronic chr7:10976446(-) A-I      intronic chr7:10977085(-) A-I      intronic chr7:10976426(-) A-I      intronic chr7:10976580(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	NDUFA4	chr7:10975825(-) A-I intron -    15342557 chr7:10976446(-) A-I intron -    15342557 chr7:10976497(-) A-I intron -    15342557 chr7:10976500(-) A-I intron -    15342557 chr7:10976545(-) A-I intron -    15342557 chr7:10976580(-) A-I intron -    15342557 chr7:10976603(-) A-I intron -    15342557 chr7:10977006(-) A-I intron -    15342557 chr7:10977007(-) A-I intron -    15342557 chr7:10977021(-) A-I intron -    15342557 chr7:10977080(-) A-I intron -    15342557 chr7:10977083(-) A-I intron -    15342557 chr7:10977085(-) A-I intron -    15342557 chr7:10977089(-) A-I intron -    15342557 chr7:10977092(-) A-I intron -    15342557 chr7:10977166(-) A-I intron -    15342557 chr7:10977205(-) A-I intron -    15342557 chr7:10976497(-) A-G intron -    22484847 chr7:10977006(-) A-G intron -    22484847 chr7:10977007(-) A-G intron -    22484847 chr7:10977085(-) A-G intron -    22484847 chr7:10977134(-) A-G intron -    22484847 chr7:10977166(-) A-G intron -    22484847 chr7:10977205(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	NDUFA4	chr7:10973087-10973088(-) m6A 3'UTR       24284625 chr7:10978084-10978085(-) m6A exon//intron       24284625 chr7:10978091-10978092(-) m6A exon//intron       24284625 chr7:10978495-10978496(-) m6A CDS//exon       24284625 chr7:10978594-10978595(-) m6A exon//intron       24284625 chr7:10978616-10978617(-) m6A exon//intron       24284625 chr7:10978637-10978638(-) m6A exon//intron       24284625 chr7:10979685-10979686(-) m6A 5'UTR//exon       24284625//24981863//26404942//27773535//22575960 chr7:10979698-10979699(-) m6A 5'UTR//exon       24284625//24981863//26404942//27773535//22575960 chr7:10979858-10979859(-) m6A 5'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	NDUFA4	Cytosol HCC cell line (HepG2)     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleoplasm K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART6-5p
Interactor2: NDUFA4

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg