Basic Information:

  VIRBase ID:  

VHID00312905

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART6-5p:  MIMAT0003414          FGA:  NM_021871     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART6-5p	FGA
miRBase Accession/Entrez ID	MIMAT0003414	2243
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	Fib2

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	FGA	chr4:155504511-155504512(-) m6A 3'UTR       27773535 chr4:155504558-155504559(-) m6A 3'UTR       27773535 chr4:155504579-155504580(-) m6A 3'UTR       27773535 chr4:155504603-155504604(-) m6A 3'UTR       27773535 chr4:155504622-155504623(-) m6A 3'UTR       27773535 chr4:155504689-155504690(-) m6A 3'UTR       27773535 chr4:155504728-155504729(-) m6A 3'UTR       27773535 chr4:155505483-155505484(-) m6A CDS       27773535 chr4:155505498-155505499(-) m6A CDS       27773535 chr4:155505687-155505688(-) m6A CDS       24981863//27773535 chr4:155505804-155505805(-) m6A CDS       24981863//27773535 chr4:155505814-155505815(-) m6A CDS       24981863//27773535 chr4:155505877-155505878(-) m6A CDS       24981863//27773535 chr4:155505964-155505965(-) m6A CDS       27773535 chr4:155506415-155506416(-) m6A 3'UTR//intron       27773535 chr4:155506535-155506536(-) m6A 3'UTR//intron       27773535 chr4:155506566-155506567(-) m6A 3'UTR//intron       27773535 chr4:155506734-155506735(-) m6A CDS       24981863//27773535 chr4:155506802-155506803(-) m6A CDS       24981863//27773535 chr4:155506837-155506838(-) m6A CDS       24981863//27773535 chr4:155506950-155506951(-) m6A CDS//intron       24981863//27773535 chr4:155506998-155506999(-) m6A CDS//intron       24981863//26404942//27773535 chr4:155507178-155507179(-) m6A CDS//intron       24981863//26404942//27773535 chr4:155507190-155507191(-) m6A CDS//intron       24981863//26404942//27773535 chr4:155507250-155507251(-) m6A CDS//intron       24981863//26404942//27773535 chr4:155507284-155507285(-) m6A CDS//intron       24981863//26404942//27773535 chr4:155507310-155507311(-) m6A CDS//intron       24981863//26404942//27773535 chr4:155507354-155507355(-) m6A CDS//intron       24981863//26404942//27773535 chr4:155507428-155507429(-) m6A CDS//intron       24981863//26404942//27773535 chr4:155507460-155507461(-) m6A CDS//intron       24981863//26404942//27773535 chr4:155507505-155507506(-) m6A CDS//intron       24981863//26404942//27773535 chr4:155507521-155507522(-) m6A CDS//intron       24981863//26404942//27773535 chr4:155507537-155507538(-) m6A CDS//intron       24981863//26404942//27773535 chr4:155507543-155507544(-) m6A CDS//intron       24981863//26404942//27773535 chr4:155507559-155507560(-) m6A CDS//intron       24981863//26404942//27773535 chr4:155507576-155507577(-) m6A CDS//intron       24981863//26404942//27773535 chr4:155507599-155507600(-) m6A CDS//intron       24981863//26404942//27773535 chr4:155507614-155507615(-) m6A CDS//intron       24981863//26404942//27773535 chr4:155507628-155507629(-) m6A CDS//intron       24981863//26404942//27773535 chr4:155507637-155507638(-) m6A CDS//intron       24981863//26404942//27773535 chr4:155507654-155507655(-) m6A CDS//intron       24981863//26404942//27773535 chr4:155507660-155507661(-) m6A CDS//intron       24981863//26404942//27773535 chr4:155507677-155507678(-) m6A CDS//intron       24981863//26404942//27773535 chr4:155507693-155507694(-) m6A CDS//intron       24981863//26404942//27773535 chr4:155507717-155507718(-) m6A CDS//intron       24981863//26404942//27773535 chr4:155507745-155507746(-) m6A CDS//intron       24981863//26404942//27773535 chr4:155507791-155507792(-) m6A CDS//intron       24981863//26404942//27773535 chr4:155507822-155507823(-) m6A CDS//intron       24981863//26404942//27773535 chr4:155507888-155507889(-) m6A CDS//intron       24981863//27773535 chr4:155507899-155507900(-) m6A CDS//intron       24981863//27773535 chr4:155507948-155507949(-) m6A CDS       24981863//27773535 chr4:155507965-155507966(-) m6A CDS       24981863//27773535 chr4:155507993-155507994(-) m6A CDS       24981863//27773535 chr4:155508065-155508066(-) m6A CDS       24981863//27773535 chr4:155510015-155510016(-) m6A CDS       27773535 chr4:155510060-155510061(-) m6A CDS       27773535 chr4:155510592-155510593(-) m6A CDS       27773535 chr4:155510616-155510617(-) m6A CDS       27773535 chr4:155510642-155510643(-) m6A CDS       24981863//27773535 chr4:155511908-155511909(-) m6A 5'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	FGA	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)     - Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Membrane HCC cell line (HepG2)     - Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART6-5p
Interactor2: FGA

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg