Detail Information

Basic Information:


  VIRBase ID:  

VHID00311122

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART5-5p:           SLC22A23:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART5-5p SLC22A23
miRBase
Accession/Entrez ID		 MIMAT0003413 63027
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - C6orf85

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SLC22A23
chr6:3322230(-) A-I      intronic
chr6:3321278(-) A-I      intronic
chr6:3322207(-) A-I      intronic
chr6:3322214(-) A-I      intronic
chr6:3320792(-) A-I      intronic
chr6:3322215(-) A-I      intronic
chr6:3300424(-) A-I      intronic
chr6:3283627(-) A-I      intronic
chr6:3283589(-) A-I      intronic
chr6:3283584(-) A-I      intronic
chr6:3283500(-) A-I      intronic
chr6:3283436(-) A-I      intronic
chr6:3436661(-) A-I      intronic
chr6:3437801(-) A-I      intronic
chr6:3300382(-) A-I      intronic
chr6:3450742(-) A-I      intronic
chr6:3400250(-) A-I      intronic
chr6:3300356(-) A-I      intronic
chr6:3314219(-) A-I      intronic
chr6:3314038(-) A-I      intronic
chr6:3300534(-) A-I      intronic
chr6:3300516(-) A-I      intronic
chr6:3300515(-) A-I      intronic
chr6:3300489(-) A-I      intronic
chr6:3283630(-) A-I      intronic
chr6:3334520(-) A-I      intronic
chr6:3300341(-) A-I      intronic
chr6:3300449(-) A-I      intronic
chr6:3300438(-) A-I      intronic
chr6:3300337(-) A-I      intronic
chr6:3300274(-) A-I      intronic
chr6:3452576(-) A-I      intronic
chr6:3334528(-) A-I      intronic
chr6:3400142(-) A-I      intronic
chr6:3385521(-) A-I      intronic
chr6:3334516(-) A-I      intronic
chr6:3276050(-) A-I      intronic
chr6:3300433(-) A-I      intronic
chr6:3283415(-) A-I      intronic
chr6:3298950(-) A-I      intronic
chr6:3317060(-) A-I      intronic
chr6:3317035(-) A-I      intronic
chr6:3300421(-) A-I      intronic
chr6:3300383(-) A-I      intronic
chr6:3283647(-) A-I      intronic
chr6:3334533(-) A-I      intronic
chr6:3452644(-) A-I      intronic
chr6:3315909(-) A-I      intronic
chr6:3317091(-) A-I      intronic
chr6:3365387(-) A-I      intronic
chr6:3451497(-) A-I      intronic
chr6:3452642(-) A-I      intronic
chr6:3316943(-) A-I      intronic
chr6:3309413(-) A-I      intronic
chr6:3317076(-) A-I      intronic
chr6:3316996(-) A-I      intronic
chr6:3438120(-) A-I      intronic
chr6:3315934(-) A-I      intronic
chr6:3452662(-) A-I      intronic
chr6:3314203(-) A-I      intronic
chr6:3452705(-) A-I      intronic
chr6:3317019(-) A-I      intronic
chr6:3421320(-) A-I      intronic
chr6:3448108(-) A-I      intronic
chr6:3421331(-) A-I      intronic
chr6:3450709(-) A-I      intronic
chr6:3400385(-) A-I      intronic
chr6:3448027(-) A-I      intronic
chr6:3451703(-) A-I      intronic
chr6:3316974(-) A-I      intronic
chr6:3316932(-) A-I      intronic
chr6:3314230(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SLC22A23
chr6:3317114(-) A-G intron -    22484847
chr6:3440814(-) C-T intron -    22484847
chr6:3440827(-) C-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SLC22A23
chr6:3269206-3269207(-) m6A 3'UTR       27773535
chr6:3269272-3269273(-) m6A 3'UTR       27773535
chr6:3269286-3269287(-) m6A 3'UTR       27773535
chr6:3269870-3269871(-) m6A 3'UTR       27773535
chr6:3269907-3269908(-) m6A 3'UTR       27773535
chr6:3270075-3270076(-) m6A 3'UTR       24284625//24981863//27773535
chr6:3270112-3270113(-) m6A 3'UTR       24284625//24981863//27773535
chr6:3270143-3270144(-) m6A 3'UTR       24284625//24981863//27773535
chr6:3270149-3270150(-) m6A 3'UTR       24284625//24981863//27773535
chr6:3270160-3270161(-) m6A 3'UTR       24284625//24981863//27773535
chr6:3270247-3270248(-) m6A 3'UTR       27773535
chr6:3270288-3270289(-) m6A 3'UTR       24981863//27773535
chr6:3270322-3270323(-) m6A 3'UTR       24981863//27773535
chr6:3270341-3270342(-) m6A 3'UTR       24981863//27773535
chr6:3270465-3270466(-) m6A 3'UTR       27773535
chr6:3270502-3270503(-) m6A 3'UTR       27773535
chr6:3270596-3270597(-) m6A 3'UTR       27773535
chr6:3270869-3270870(-) m6A 3'UTR       24284625//25456834//24981863//27773535//22608085
chr6:3270912-3270913(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22608085
chr6:3270939-3270940(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22608085
chr6:3270954-3270955(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22608085
chr6:3271013-3271014(-) m6A 3'UTR       24284625//25456834//24981863//27773535//22608085
chr6:3271084-3271085(-) m6A 3'UTR       24284625//25456834//24981863//27773535//22608085
chr6:3271207-3271208(-) m6A 3'UTR       24284625//25456834//27773535
chr6:3271284-3271285(-) m6A 3'UTR       24284625//24981863//27773535
chr6:3271307-3271308(-) m6A 3'UTR       24284625//24981863//27773535
chr6:3271366-3271367(-) m6A 3'UTR       24284625//27773535
chr6:3271561-3271562(-) m6A 3'UTR       24284625//25456834//24981863//27773535
chr6:3271590-3271591(-) m6A 3'UTR       24284625//25456834//24981863//27773535
chr6:3271610-3271611(-) m6A 3'UTR       24284625//25456834//24981863//27773535
chr6:3271774-3271775(-) m6A 3'UTR       24284625//25456834//24981863//27773535//22608085
chr6:3271880-3271881(-) m6A 3'UTR       24284625//25456834//24981863//27773535//22608085
chr6:3271940-3271941(-) m6A 3'UTR       24284625//25456834//24981863//27773535//22608085
chr6:3271960-3271961(-) m6A 3'UTR       24284625//25456834//24981863//27773535//22608085
chr6:3271969-3271970(-) m6A 3'UTR       24284625//25456834//24981863//27773535//22608085
chr6:3272096-3272097(-) m6A 3'UTR       24284625//25456834//24981863//27773535//22608085
chr6:3272265-3272266(-) m6A 3'UTR       24284625//25456834//24981863//27773535//22608085
chr6:3272401-3272402(-) m6A 3'UTR       24284625//24981863//27773535
chr6:3272425-3272426(-) m6A 3'UTR       24284625//24981863//27773535
chr6:3272523-3272524(-) m6A 3'UTR       24284625//27773535//22608085
chr6:3272602-3272603(-) m6A 3'UTR       24284625//22608085
chr6:3272673-3272674(-) m6A 3'UTR       24284625//22575960//22608085
chr6:3272820-3272821(-) m6A 3'UTR//intron       24284625//25456834//24981863//27773535//27371828//27773536//22608085
chr6:3272839-3272840(-) m6A 3'UTR//intron       24284625//25456834//24981863//27773535//27371828//27773536//22608085
chr6:3272904-3272905(-) m6A 3'UTR//intron       24284625//25456834//24981863//27371828//27773536//22608085
chr6:3273083-3273084(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085
chr6:3273112-3273113(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//27773536//22608085
chr6:3273217-3273218(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//27773536//22608085
chr6:3273222-3273223(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//27773536//22608085
chr6:3273229-3273230(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//27773536//22608085
chr6:3273274-3273275(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22608085
chr6:3273370-3273371(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27371828//27773536//22608085
chr6:3273463-3273464(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr6:3273475-3273476(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr6:3273481-3273482(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//22608085
chr6:3283853-3283854(-) m6A 3'UTR//intron       25456834
chr6:3283899-3283900(-) m6A 3'UTR//intron       24284625//25456834
chr6:3283932-3283933(-) m6A 3'UTR//intron       24284625//25456834
chr6:3283972-3283973(-) m6A CDS//intron       24284625//25456834
chr6:3456182-3456183(-) m6A CDS       27371828//27773536//22608085
chr6:3456215-3456216(-) m6A CDS       25456834//27371828//27773536//22608085
chr6:3456224-3456225(-) m6A CDS       25456834//27371828//27773536//22608085
chr6:3456336-3456337(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22608085
chr6:3456350-3456351(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22608085
chr6:3456428-3456429(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22608085
chr6:3456443-3456444(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22608085
chr6:3456501-3456502(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22608085
chr6:3456557-3456558(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22608085
chr6:3456782-3456783(-) m6A CDS       27773536
chr6:3457062-3457063(-) m6A 5'UTR       27773536
chr6:3457171-3457172(-) m6A 5'UTR       25456834//27371828//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SLC22A23
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART5-5p
Interactor2: SLC22A23

Evidence Support:


Prediction-Evidence miRanda//PITA//Targetscan
Support Database VmiReg

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