Basic Information:

  VIRBase ID:  

VHID00310313

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART5-5p:  MIMAT0003413          BBS9:  NR_145411     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART5-5p	BBS9
miRBase Accession/Entrez ID	MIMAT0003413	27241
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	B1//C18//D1//PTHB1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	BBS9	chr7:33181145(+) A-I      intronic chr7:33332497(+) A-I      intronic chr7:33332498(+) A-I      intronic chr7:33181146(+) A-I      intronic chr7:33188184(+) A-I      intronic chr7:33190649(+) A-I      intronic chr7:33227459(+) A-I      intronic chr7:33228732(+) A-I      intronic chr7:33318667(+) A-I      intronic chr7:33228733(+) A-I      intronic chr7:33191599(+) A-I      intronic chr7:33229812(+) A-I      intronic chr7:33523346(+) A-I      intronic chr7:33479234(+) A-I      intronic chr7:33455708(+) A-I      intronic chr7:33367190(+) A-I      intronic chr7:33228736(+) A-I      intronic chr7:33228911(+) A-I      intronic chr7:33275863(+) A-I      intronic chr7:33229333(+) A-I      intronic chr7:33229337(+) A-I      intronic chr7:33318717(+) A-I      intronic chr7:33181121(+) A-I      intronic chr7:33279453(+) A-I      intronic chr7:33391490(+) A-I      intronic chr7:33243940(+) A-I      intronic chr7:33279393(+) A-I      intronic chr7:33279364(+) A-I      intronic chr7:33279500(+) A-I      intronic chr7:33172585(+) A-I      intronic chr7:33229346(+) A-I      intronic chr7:33275850(+) A-I      intronic chr7:33229387(+) A-I      intronic chr7:33275844(+) A-I      intronic chr7:33171337(+) A-I      intronic chr7:33555990(+) A-I      intronic chr7:33555940(+) A-I      intronic chr7:33186063(+) A-I      intronic chr7:33555847(+) A-I      intronic chr7:33556058(+) A-I      intronic chr7:33332539(+) A-I      intronic chr7:33309484(+) A-I      intronic chr7:33414299(+) A-I      intronic chr7:33555886(+) A-I      intronic chr7:33556022(+) A-I      intronic chr7:33321049(+) A-I      intronic chr7:33329608(+) A-I      intronic chr7:33329603(+) A-I      intronic chr7:33314352(+) A-I      intronic chr7:33555891(+) A-I      intronic chr7:33415437(+) A-I      intronic chr7:33555970(+) A-I      intronic chr7:33555930(+) A-I      intronic chr7:33555839(+) A-I      intronic chr7:33555950(+) A-I      intronic chr7:33555905(+) A-I      intronic chr7:33321111(+) A-I      intronic chr7:33555943(+) A-I      intronic chr7:33555848(+) A-I      intronic chr7:33570726(+) A-I      intronic chr7:33180870(+) A-I      intronic chr7:33228851(+) A-I      intronic chr7:33367196(+) A-I      intronic chr7:33181090(+) A-I      intronic chr7:33180864(+) A-I      intronic chr7:33186058(+) A-I      intronic chr7:33275685(+) A-I      intronic chr7:33186150(+) A-I      intronic chr7:33180777(+) A-I      intronic chr7:33414390(+) A-I      intronic chr7:33194171(+) A-I      intronic chr7:33532686(+) A-I      intronic chr7:33229504(+) A-I      intronic chr7:33180849(+) A-I      intronic chr7:33227455(+) A-I      intronic chr7:33429285(+) A-I      intronic chr7:33406188(+) A-I      intronic chr7:33306540(+) A-I      intronic chr7:33228853(+) A-I      intronic chr7:33453557(+) A-I      intronic chr7:33373421(+) A-I      intronic chr7:33243852(+) A-I      intronic chr7:33174769(+) A-I      intronic chr7:33321089(+) A-I      intronic chr7:33331995(+) A-I      intronic chr7:33332524(+) A-I      intronic chr7:33229861(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	BBS9	chr7:33186057(+) A-I intron -    15258596 chr7:33186058(+) A-I intron -    15258596 chr7:33186063(+) A-I intron -    15258596 chr7:33186108(+) A-I intron -    15258596 chr7:33186150(+) A-I intron -    15258596 chr7:33427694(+) A-I exon CDS    19478186 chr7:33555839(+) A-I intron -    22028664 chr7:33555841(+) A-I intron -    22028664 chr7:33555847(+) A-I intron -    22028664 chr7:33555848(+) A-I intron -    22028664 chr7:33555886(+) A-I intron -    22028664 chr7:33555891(+) A-I intron -    22028664 chr7:33555905(+) A-I intron -    22028664 chr7:33555930(+) A-I intron -    22028664 chr7:33555940(+) A-I intron -    22028664 chr7:33555943(+) A-I intron -    22028664 chr7:33555950(+) A-I intron -    22028664 chr7:33555970(+) A-I intron -    22028664 chr7:33555990(+) A-I intron -    22028664 chr7:33556022(+) A-I intron -    22028664 chr7:33556058(+) A-I intron -    22028664 chr7:33180777(+) A-G intron -    22484847 chr7:33180864(+) A-G intron -    22484847 chr7:33180870(+) A-G intron -    22484847 chr7:33181090(+) A-G intron -    22484847 chr7:33181095(+) A-G intron -    22484847 chr7:33190808(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	BBS9	chr7:33169305-33169306(+) m6A 5'UTR//exon//intron       24284625//24981863//22608085 chr7:33420063-33420064(+) m6A intron       22608085 chr7:33420068-33420069(+) m6A intron       22608085 chr7:33420108-33420109(+) m6A intron       22608085 chr7:33420120-33420121(+) m6A intron       22608085 chr7:33420168-33420169(+) m6A intron       22608085 chr7:33644887-33644888(+) m6A 3'UTR       24981863 chr7:33644897-33644898(+) m6A 3'UTR       24981863 chr7:33644987-33644988(+) m6A 3'UTR       24284625//24981863 chr7:33645008-33645009(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	BBS9	Cytosol HCC cell line (HepG2)     - Exosome Blood     - Nucleus K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART5-5p
Interactor2: BBS9

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg