Basic Information:
VIRBase ID: VHID00309965
Virus: Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)
Host: Homo sapiens
Confidence Score: 0.2483
Interaction Type: Virus-Host interaction
Predicted Binding:
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Interactor Information:
Interactor1
Interactor2
Symbol
ebv-miR-BART5-5p
RPIA
miRBase Accession/Entrez ID
MIMAT0003413
22934
Organism
Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)
Homo sapiens
Category
miRNA
mRNA
Alias
-
RPI//RPIAD
RNA Editing:
Resource
Symbol
Editing Position
Change
Genetic Region
RADAR
RPIA
Resource
Symbol
Editing Position
Change
SeqReg
exReg
PMID
DARNED
RPIA
RNA Modification:
Resource
Symbol
ModificationPosition
Type
Genomic Context
PMID
RMBase
RPIA
RNA Localization:
Resource
Symbol
Subcellular Localization
Tissue or Cell Line
PMID
RNALocate
RPIA
Interaction Network (The top 100 interactions) :
Interactor1: ebv-miR-BART5-5p
Interactor2: RPIA
Evidence Support:
Prediction-Evidence
cRep//miRanda//PITA//RNAHybrid//Targetscan
Support Database
RepTar//VmiReg
References:
PMID
18838543
Target region
3'UTR
Source
RepTar//VmiReg
Interactor1 expression
None
Tissue or cell line
HeLa cells//HK1 cells
Interactor2 expression
None
Description
We predicted cellular targets of all miR-BARTs using miRanda (18, 19) and RNAhybrid (20) programs, which have previously been shown to be successful in target prediction (21).