Basic Information:

  VIRBase ID:  

VHID00309018

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART5-5p:  MIMAT0003413          SRSF6:  NR_034009     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART5-5p	SRSF6
miRBase Accession/Entrez ID	MIMAT0003413	6431
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	B52//HEL-S-91//SFRS6//SRP55

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SRSF6	chr20:42086671-42086672(+) m6A 5'UTR       24284625//24981863//22575960 chr20:42086722-42086723(+) m6A CDS       22575960 chr20:42086767-42086768(+) m6A CDS       22575960 chr20:42087023-42087024(+) m6A CDS       22575960 chr20:42088726-42088727(+) m6A 3'UTR//CDS       27773535 chr20:42089709-42089710(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chr20:42089735-42089736(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chr20:42089807-42089808(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chr20:42089884-42089885(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085 chr20:42090258-42090259(+) m6A 3'UTR       27773535 chr20:42090284-42090285(+) m6A 3'UTR       27773535 chr20:42092064-42092065(+) m6A 3'UTR       27773535 chr20:42092105-42092106(+) m6A 3'UTR       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SRSF6	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus Colon cancer cells     24393600 Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART5-5p
Interactor2: SRSF6

Evidence Support:

Prediction-Evidence	miRanda//PITA
Support Database	VmiReg