Basic Information:

  VIRBase ID:  

VHID00307380

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART4-5p:  MIMAT0003412          VPS37A:  NM_152415     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART4-5p	VPS37A
miRBase Accession/Entrez ID	MIMAT0003412	137492
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	HCRP1//PQBP2//SPG53

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	VPS37A	chr8:17112825(+) A-I      intronic chr8:17112830(+) A-I      intronic chr8:17112831(+) A-I      intronic chr8:17120394(+) A-I      intronic chr8:17109737(+) A-I      intronic chr8:17109721(+) A-I      intronic chr8:17104982(+) A-I      intronic chr8:17124356(+) A-I      intronic chr8:17124361(+) A-I      intronic chr8:17124399(+) A-I      intronic chr8:17148584(+) A-I      intronic chr8:17148774(+) A-I      intronic chr8:17148783(+) A-I      intronic chr8:17109725(+) A-I      intronic chr8:17112806(+) A-I      intronic chr8:17121224(+) A-I      intronic chr8:17109730(+) A-I      intronic chr8:17148784(+) A-I      intronic chr8:17112780(+) A-I      intronic chr8:17109749(+) A-I      intronic chr8:17109746(+) A-I      intronic chr8:17155353(+) A-I      3'UTR chr8:17155389(+) A-I      3'UTR chr8:17153744(+) A-I      3'UTR chr8:17155364(+) A-I      3'UTR chr8:17155363(+) A-I      3'UTR chr8:17155354(+) A-I      3'UTR chr8:17155380(+) A-I      3'UTR chr8:17155405(+) A-I      3'UTR chr8:17155384(+) A-I      3'UTR chr8:17153808(+) A-I      3'UTR chr8:17155385(+) A-I      3'UTR chr8:17153751(+) A-I      3'UTR chr8:17155392(+) A-I      3'UTR chr8:17155361(+) A-I      3'UTR chr8:17155391(+) A-I      3'UTR chr8:17153809(+) A-I      3'UTR chr8:17109787(+) A-I      intronic chr8:17105913(+) A-I      intronic chr8:17124462(+) A-I      intronic chr8:17148587(+) A-I      intronic chr8:17109800(+) A-I      intronic chr8:17124519(+) A-I      intronic chr8:17120449(+) A-I      intronic chr8:17121439(+) A-I      intronic chr8:17124511(+) A-I      intronic chr8:17120316(+) A-I      intronic chr8:17121319(+) A-I      intronic chr8:17114314(+) A-I      intronic chr8:17124382(+) A-I      intronic chr8:17148597(+) A-I      intronic chr8:17124302(+) A-I      intronic chr8:17128860(+) A-I      intronic chr8:17112955(+) A-I      intronic chr8:17114262(+) A-I      intronic chr8:17112804(+) A-I      intronic chr8:17109705(+) A-I      intronic chr8:17112869(+) A-I      intronic chr8:17112922(+) A-I      intronic chr8:17112905(+) A-I      intronic chr8:17121357(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	VPS37A	chr8:17109705(+) A-G intron -    22484847 chr8:17109800(+) A-G intron -    22484847 chr8:17112804(+) A-G intron -    22484847 chr8:17112814(+) A-G intron -    22484847 chr8:17112869(+) A-G intron -    22484847 chr8:17112870(+) A-G intron -    22484847 chr8:17112905(+) A-G intron -    22484847 chr8:17112931(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	VPS37A	chr8:17104229-17104230(+) m6A 5'UTR       24981863//27371828 chr8:17104293-17104294(+) m6A 5'UTR       24981863//27371828//27773536 chr8:17104523-17104524(+) m6A 5'UTR       24284625 chr8:17104588-17104589(+) m6A 5'UTR       - chr8:17104608-17104609(+) m6A 5'UTR       - chr8:17104681-17104682(+) m6A 5'UTR       25456834 chr8:17104742-17104743(+) m6A 5'UTR       - chr8:17132324-17132325(+) m6A CDS       24981863 chr8:17142063-17142064(+) m6A 3'UTR//CDS       27773535 chr8:17142122-17142123(+) m6A 3'UTR//CDS       27773535 chr8:17157367-17157368(+) m6A exon//intron       25456834//22608085 chr8:17157384-17157385(+) m6A exon//intron       25456834//22608085 chr8:17157453-17157454(+) m6A exon//intron       25456834//24981863//22608085 chr8:17157480-17157481(+) m6A exon//intron       25456834//24981863//22608085 chr8:17157517-17157518(+) m6A exon//intron       25456834//24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	VPS37A	Chromatin K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART4-5p
Interactor2: VPS37A

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg