Basic Information:

  VIRBase ID:  

VHID00307336

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART4-5p:  MIMAT0003412          TYW3:  NR_027962     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART4-5p	TYW3
miRBase Accession/Entrez ID	MIMAT0003412	127253
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C1orf171

RNA Editing:

Resource	Symbol	Editing Position
Lncediting	TYW3	chr1: 75217103     chr1: 75217102     chr1: 75217080     chr1: 75216770     chr1: 75216758     chr1: 75216757     chr1: 75216735

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TYW3	chr1:75216725(+) A-I      intronic chr1:75216609(+) A-I      intronic chr1:75216566(+) A-I      intronic chr1:75216236(+) A-I      intronic chr1:75216198(+) A-I      intronic chr1:75216197(+) A-I      intronic chr1:75216169(+) A-I      intronic chr1:75216168(+) A-I      intronic chr1:75216157(+) A-I      intronic chr1:75216131(+) A-I      intronic chr1:75216097(+) A-I      intronic chr1:75215984(+) A-I      intronic chr1:75215560(+) A-I      intronic chr1:75212466(+) A-I      intronic chr1:75212508(+) A-I      intronic chr1:75215396(+) A-I      intronic chr1:75215440(+) A-I      intronic chr1:75215484(+) A-I      intronic chr1:75216528(+) A-I      intronic chr1:75215561(+) A-I      intronic chr1:75215623(+) A-I      intronic chr1:75215565(+) A-I      intronic chr1:75216730(+) A-I      intronic chr1:75216662(+) A-I      intronic chr1:75216101(+) A-I      intronic chr1:75216592(+) A-I      intronic chr1:75216522(+) A-I      intronic chr1:75215624(+) A-I      intronic chr1:75217102(+) A-I      intronic chr1:75216735(+) A-I      intronic chr1:75216770(+) A-I      intronic chr1:75215493(+) A-I      intronic chr1:75215533(+) A-I      intronic chr1:75216235(+) A-I      intronic chr1:75213531(+) A-I      intronic chr1:75216757(+) A-I      intronic chr1:75216561(+) A-I      intronic chr1:75213417(+) A-I      intronic chr1:75216585(+) A-I      intronic chr1:75216090(+) A-I      intronic chr1:75216758(+) A-I      intronic chr1:75213383(+) A-I      intronic chr1:75213419(+) A-I      intronic chr1:75217103(+) A-I      intronic chr1:75217080(+) A-I      intronic chr1:75216661(+) A-I      intronic chr1:75213595(+) A-I      intronic chr1:75216718(+) A-I      intronic chr1:75216596(+) A-I      intronic chr1:75213461(+) A-I      intronic chr1:75213421(+) A-I      intronic chr1:75216591(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	TYW3	chr1:75216735(+) A-I intron -    15258596 chr1:75216757(+) A-I intron -    15258596 chr1:75216758(+) A-I intron -    15258596 chr1:75216770(+) A-I intron -    15258596 chr1:75217080(+) A-I intron -    15258596 chr1:75217102(+) A-I intron -    15258596 chr1:75213383(+) A-I intron -    22327324 chr1:75213417(+) A-I intron -    22327324 chr1:75213419(+) A-I intron -    22327324 chr1:75213421(+) A-I intron -    22327324 chr1:75213461(+) A-I intron -    22327324 chr1:75213531(+) A-I intron -    22327324 chr1:75213595(+) A-I intron -    22327324

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TYW3	chr1:75198910-75198911(+) m6A 5'UTR       24284625//24981863 chr1:75198983-75198984(+) m6A 5'UTR//CDS       24284625//24981863 chr1:75199040-75199041(+) m6A 5'UTR//CDS       - chr1:75214497-75214498(+) m6A CDS//exon       27773535 chr1:75218025-75218026(+) m6A CDS//exon       27773535 chr1:75218090-75218091(+) m6A CDS//exon       27773535 chr1:75227352-75227353(+) m6A exon//intron       27773535 chr1:75227399-75227400(+) m6A exon//intron       24981863//27773535 chr1:75229684-75229685(+) m6A CDS//exon       24284625//24981863//27773535//22608085 chr1:75229695-75229696(+) m6A CDS//exon       24284625//24981863//27773535//22608085 chr1:75229733-75229734(+) m6A CDS//exon       24284625//24981863//27773535//22608085 chr1:75231707-75231708(+) m6A 3'UTR//intron       24981863 chr1:75231752-75231753(+) m6A 3'UTR//intron       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TYW3	Chromatin K562 cells     - Exosome Blood     - Nucleoplasm K562 cells     - Nucleus K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART4-5p
Interactor2: TYW3

Evidence Support:

Prediction-Evidence	cRep//miRanda
Support Database	RepTar//VmiReg