Basic Information:

  VIRBase ID:  

VHID00307224

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.6040

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART4-5p:  MIMAT0003412          MARS2:  NM_138395     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART4-5p	MARS2
miRBase Accession/Entrez ID	MIMAT0003412	92935
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	COXPD25//MetRS//mtMetRS

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	MARS2	chr2:198570196-198570197(+) m6A CDS       24284625 chr2:198570482-198570483(+) Y CDS       26075521 chr2:198570744-198570745(+) m6A CDS       24284625//25456834//24981863//22608085 chr2:198570757-198570758(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr2:198570836-198570837(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr2:198570951-198570952(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr2:198571018-198571019(+) Y CDS       26075521 chr2:198571060-198571061(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr2:198571152-198571153(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr2:198571206-198571207(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr2:198571276-198571277(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr2:198571315-198571316(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr2:198571351-198571352(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr2:198571386-198571387(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr2:198571513-198571514(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr2:198571575-198571576(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr2:198571615-198571616(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr2:198571692-198571693(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr2:198571805-198571806(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr2:198571838-198571839(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr2:198571845-198571846(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr2:198571865-198571866(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr2:198571870-198571871(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr2:198571881-198571882(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr2:198571905-198571906(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr2:198571913-198571914(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr2:198572156-198572157(+) m6A 3'UTR       - chr2:198572198-198572199(+) m6A 3'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	MARS2	Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleus HeLa-S3 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART4-5p
Interactor2: MARS2

Evidence Support:

Weak-Evidence	PAR-CLIP
Prediction-Evidence	miRanda//PARalyzer//PITA//Targetscan
Support Database	ViRBase//VIRmiRNA//VmiReg

References:

[1]PMID	22100165	Target region	3'UTR
Source	ViRBase//VIRmiRNA//VmiReg	Interactor1 expression	None
Tissue or cell line	BC-1 cells	Interactor2 expression	Downregulation
Description	Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites.Clusters with seed matches to expressed miRNAs were considered candidate target sites. Of the clusters mapping to human 3'UTRs, 69% (BC-1) and 70% (BC-3) had seed matches to expressed miRNAs (Tables S6).Table S6A BC-1 derived 3'UTR clusters with seed matches to expressed miRNAs.

[2]PMID	22291592	Target region	3'UTR
Source	ViRBase//VIRmiRNA//VmiReg	Interactor1 expression	None
Tissue or cell line	EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells	Interactor2 expression	Downregulation
Description	We identified 7,827 miRNA-interaction sites in 3,492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.We identified an additional 2,972 CDS miRNA-interaction sites present in at least two libraries, 89.7% of which could be assigned to a miRNA (Table S7).