Basic Information:

  VIRBase ID:  

VHID00306544

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART4-5p:  MIMAT0003412          TMA16:  NM_018352     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART4-5p	TMA16
miRBase Accession/Entrez ID	MIMAT0003412	55319
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C4orf43

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TMA16	chr4:164432779(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TMA16	chr4:164415980-164415981(+) m6A exon//intron       24981863//22608085 chr4:164428279-164428280(+) m6A CDS//exon       24981863//27773535 chr4:164435298-164435299(+) m6A CDS//exon       27773535 chr4:164436555-164436556(+) m6A CDS//exon//intron       27773535 chr4:164438548-164438549(+) m6A exon//intron       22608085 chr4:164438594-164438595(+) m6A CDS//exon//intron       24981863//22608085 chr4:164438620-164438621(+) m6A 3'UTR//CDS//exon//intron       24981863//22608085 chr4:164438684-164438685(+) m6A 3'UTR//intron       24284625//24209618//24981863//22608085 chr4:164440493-164440494(+) m6A 3'UTR//CDS//exon//intron       24284625//24209618//24981863//27773535//22608085 chr4:164440517-164440518(+) m6A 3'UTR//CDS//exon//intron       24284625//24209618//24981863//27773535//22608085 chr4:164440576-164440577(+) m6A 3'UTR//CDS//exon//intron       24284625//24209618//24981863//27773535//22575960//22608085 chr4:164440592-164440593(+) m6A 3'UTR//CDS//exon//intron       24284625//24209618//24981863//27773535//22608085 chr4:164440614-164440615(+) m6A 3'UTR//CDS//exon//intron       24284625//24209618//24981863//27773535//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TMA16	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART4-5p
Interactor2: TMA16

Evidence Support:

Prediction-Evidence	miRanda//PITA
Support Database	VmiReg