Basic Information:

  VIRBase ID:  

VHID00305632

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.6061

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART4-5p:  MIMAT0003412          MSC:  NM_005098     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART4-5p	MSC
miRBase Accession/Entrez ID	MIMAT0003412	9242
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	ABF-1//ABF1//bHLHa22//MYOR

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	MSC	chr8:72754028-72754029(-) m6A 3'UTR       24981863//28052920//27371828 chr8:72754290-72754291(-) m6A 3'UTR       27371828 chr8:72754406-72754407(-) m6A 3'UTR       25456834//24981863//28052920//27371828 chr8:72754437-72754438(-) m6A 3'UTR       25456834//24981863//28052920//27371828 chr8:72754570-72754571(-) m6A 3'UTR       25456834//24981863//28052920//27371828 chr8:72754604-72754605(-) m6A 3'UTR//exon       25456834//24981863//28052920//27371828 chr8:72754762-72754763(-) m6A 3'UTR//exon       25456834//24981863//28052920//27371828 chr8:72754883-72754884(-) m6A 3'UTR//exon       25456834//24981863//28052920//26404942//27371828 chr8:72754889-72754890(-) m6A 3'UTR//exon       25456834//24981863//28052920//26404942//27371828 chr8:72754906-72754907(-) m6A CDS//exon       25456834//24981863//28052920//26404942//27371828 chr8:72754916-72754917(-) m6A CDS//exon       25456834//24981863//28052920//26404942//27371828 chr8:72754950-72754951(-) m6A CDS//exon       25456834//24981863//28052920//26404942//27371828 chr8:72754955-72754956(-) m6A CDS//exon       25456834//24981863//28052920//26404942//27371828 chr8:72755883-72755884(-) m6A CDS       - chr8:72755973-72755974(-) m6A CDS       27371828 chr8:72756019-72756020(-) m6A CDS       27371828 chr8:72756261-72756262(-) m6A CDS       27371828 chr8:72756420-72756421(-) m6A 5'UTR       25456834//24981863//28052920//27371828//27773536 chr8:72756463-72756464(-) m6A 5'UTR       25456834//24981863//28052920//27371828//27773536 chr8:72756471-72756472(-) m6A 5'UTR       25456834//24981863//28052920//27371828//27773536 chr8:72756635-72756636(-) m6A 5'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	MSC	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART4-5p
Interactor2: MSC

Evidence Support:

Weak-Evidence	PAR-CLIP
Prediction-Evidence	cRep//miRanda//PARalyzer//PITA//RNAHybrid//Targetscan
Support Database	RepTar//ViRBase//VIRmiRNA//VmiReg

References:

PMID	22100165	Target region	3'UTR
Source	RepTar//ViRBase//VIRmiRNA//VmiReg	Interactor1 expression	None
Tissue or cell line	BC-1 cells	Interactor2 expression	Downregulation
Description	Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites.Clusters with seed matches to expressed miRNAs were considered candidate target sites. Of the clusters mapping to human 3'UTRs, 69% (BC-1) and 70% (BC-3) had seed matches to expressed miRNAs (Tables S6).Table S6A BC-1 derived 3'UTR clusters with seed matches to expressed miRNAs.