Basic Information:

  VIRBase ID:  

VHID00305116

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART4-5p:  MIMAT0003412          YBX1:  NR_132737     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART4-5p	YBX1
miRBase Accession/Entrez ID	MIMAT0003412	4904
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	BP-8//CBF-A//CSDA2//CSDB//DBPB//EFI-A//MDR-NF1//NSEP-1//NSEP1//YB-1//YB1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	YBX1	chr1:43155769(+) A-I      intronic chr1:43155812(+) A-I      intronic chr1:43153655(+) A-I      intronic chr1:43152986(+) A-I      intronic chr1:43153012(+) A-I      intronic chr1:43155762(+) A-I      intronic chr1:43165352(+) A-I      intronic chr1:43165342(+) A-I      intronic chr1:43165386(+) A-I      intronic chr1:43155870(+) A-I      intronic chr1:43157564(+) A-I      intronic chr1:43155796(+) A-I      intronic chr1:43155857(+) A-I      intronic chr1:43157552(+) A-I      intronic chr1:43157559(+) A-I      intronic chr1:43155865(+) A-I      intronic chr1:43157669(+) A-I      intronic chr1:43165353(+) A-I      intronic chr1:43166054(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	YBX1	chr1:43165353(+) A-I intron -    21960545 chr1:43155796(+) A-G intron -    22484847 chr1:43157073(+) A-C intron -    22484847 chr1:43157542(+) A-T intron -    22484847 chr1:43165386(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	YBX1	chr1:43148127-43148128(+) m6A 5'UTR       24284625//24209618//25456834//24981863//27371828//22575960//22608085 chr1:43148254-43148255(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr1:43148387-43148388(+) m6A CDS       24209618//24981863//22575960 chr1:43148995-43148996(+) m6A CDS//exon//intron       24981863 chr1:43149090-43149091(+) m6A CDS//exon//intron       24981863//27773535//22575960 chr1:43161926-43161927(+) m6A CDS//exon//intron       24981863//27773535 chr1:43162379-43162380(+) m6A CDS//exon       24981863//27773535 chr1:43162557-43162558(+) m6A CDS//exon       24981863//27773535//22575960 chr1:43162876-43162877(+) m6A CDS//exon       24284625//24981863//27773535//22575960 chr1:43162885-43162886(+) m6A CDS       24284625//24981863//27773535//22575960 chr1:43162918-43162919(+) m6A CDS       24284625//24981863//27773535//22575960 chr1:43166469-43166470(+) m6A CDS       24284625//24981863//27773535//22575960 chr1:43166521-43166522(+) m6A CDS       24284625//24981863//27773535//22575960 chr1:43166591-43166592(+) m6A CDS       24284625//24981863//27773535//22575960 chr1:43166598-43166599(+) m6A CDS       24284625//24981863//27773535//22575960 chr1:43166617-43166618(+) m6A CDS       24284625//24981863//27773535//22575960 chr1:43167700-43167701(+) m6A 3'UTR       24284625//24981863//27773535 chr1:43167720-43167721(+) m6A 3'UTR       24284625//24981863//27773535 chr1:43167762-43167763(+) m6A 3'UTR       24284625//27773535 chr1:43167926-43167927(+) m6A 3'UTR       27773535 chr1:43167953-43167954(+) Y 3'UTR       25219674

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	YBX1	Cytosol HCC cell line (HepG2)     - Exosome Blood     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|K562 cells     - Ribosome-free cytosol Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART4-5p
Interactor2: YBX1

Evidence Support:

Prediction-Evidence	PITA//RNAHybrid
Support Database	VmiReg