Basic Information:

  VIRBase ID:  

VHID00304959

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.6040

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART4-5p:  MIMAT0003412          JCHAIN:  NM_144646     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART4-5p	JCHAIN
miRBase Accession/Entrez ID	MIMAT0003412	3512
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	IGCJ//IGJ//JCH

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	JCHAIN	chr4:71525413(-) A-I      intronic chr4:71525416(-) A-I      intronic chr4:71525484(-) A-I      intronic chr4:71529140(-) A-I      intronic chr4:71525046(-) A-I      intronic chr4:71529187(-) A-I      intronic chr4:71529313(-) A-I      intronic chr4:71525498(-) A-I      intronic chr4:71525501(-) A-I      intronic chr4:71526190(-) A-I      intronic chr4:71526203(-) A-I      intronic chr4:71526215(-) A-I      intronic chr4:71526239(-) A-I      intronic chr4:71526249(-) A-I      intronic chr4:71526270(-) A-I      intronic chr4:71526277(-) A-I      intronic chr4:71529887(-) A-I      intronic chr4:71529868(-) A-I      intronic chr4:71529795(-) A-I      intronic chr4:71529781(-) A-I      intronic chr4:71529553(-) A-I      intronic chr4:71529551(-) A-I      intronic chr4:71529485(-) A-I      intronic chr4:71529445(-) A-I      intronic chr4:71529442(-) A-I      intronic chr4:71526280(-) A-I      intronic chr4:71526294(-) A-I      intronic chr4:71526302(-) A-I      intronic chr4:71526304(-) A-I      intronic chr4:71526338(-) A-I      intronic chr4:71526373(-) A-I      intronic chr4:71526374(-) A-I      intronic chr4:71527250(-) A-I      intronic chr4:71527256(-) A-I      intronic chr4:71527290(-) A-I      intronic chr4:71527351(-) A-I      intronic chr4:71529315(-) A-I      intronic chr4:71529325(-) A-I      intronic chr4:71529350(-) A-I      intronic chr4:71529389(-) A-I      intronic chr4:71529410(-) A-I      intronic chr4:71529426(-) A-I      intronic chr4:71529131(-) A-I      intronic chr4:71529106(-) A-I      intronic chr4:71529072(-) A-I      intronic chr4:71529068(-) A-I      intronic chr4:71525010(-) A-I      intronic chr4:71525022(-) A-I      intronic chr4:71529046(-) A-I      intronic chr4:71529036(-) A-I      intronic chr4:71529015(-) A-I      intronic chr4:71528607(-) A-I      intronic chr4:71528600(-) A-I      intronic chr4:71528496(-) A-I      intronic chr4:71527414(-) A-I      intronic chr4:71527413(-) A-I      intronic chr4:71529416(-) A-I      intronic chr4:71525074(-) A-I      intronic chr4:71525095(-) A-I      intronic chr4:71525180(-) A-I      intronic chr4:71525181(-) A-I      intronic chr4:71525184(-) A-I      intronic chr4:71529159(-) A-I      intronic chr4:71525362(-) A-I      intronic chr4:71525406(-) A-I      intronic chr4:71525253(-) A-I      intronic chr4:71525471(-) A-I      intronic chr4:71525461(-) A-I      intronic chr4:71526238(-) A-I      intronic chr4:71529752(-) A-I      intronic chr4:71525101(-) A-I      intronic chr4:71527420(-) A-I      intronic chr4:71529061(-) A-I      intronic chr4:71529186(-) A-I      intronic chr4:71528513(-) A-I      intronic chr4:71527490(-) A-I      intronic chr4:71525191(-) A-I      intronic chr4:71525049(-) A-I      intronic chr4:71529181(-) A-I      intronic chr4:71527289(-) A-I      intronic chr4:71525576(-) A-I      intronic chr4:71529052(-) A-I      intronic chr4:71527482(-) A-I      intronic chr4:71528484(-) A-I      intronic chr4:71529759(-) A-I      intronic chr4:71528554(-) A-I      intronic chr4:71527494(-) A-I      intronic chr4:71525104(-) A-I      intronic chr4:71529000(-) A-I      intronic chr4:71528548(-) A-I      intronic chr4:71528552(-) A-I      intronic chr4:71529079(-) A-I      intronic chr4:71529550(-) A-I      intronic chr4:71528564(-) A-I      intronic chr4:71526283(-) A-I      intronic chr4:71529898(-) A-I      intronic chr4:71527434(-) A-I      intronic

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	JCHAIN	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART4-5p
Interactor2: JCHAIN

Evidence Support:

Weak-Evidence	PAR-CLIP
Prediction-Evidence	miRanda//PARalyzer//PITA//Targetscan
Support Database	ViRBase//VmiReg

References:

PMID	22291592	Target region	3'UTR
Source	ViRBase//VmiReg	Interactor1 expression	None
Tissue or cell line	EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells	Interactor2 expression	Downregulation
Description	We identified 7,827 miRNA-interaction sites in 3,492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.We identified an additional 2,972 CDS miRNA-interaction sites present in at least two libraries, 89.7% of which could be assigned to a miRNA (Table S7).