Basic Information:

  VIRBase ID:  

VHID00304134

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART3-3p:  MIMAT0003411          RBM33:  NM_053043     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART3-3p	RBM33
miRBase Accession/Entrez ID	MIMAT0003411	155435
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	PRR8

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	RBM33	chr7:155465371(+) A-I      intronic chr7:155465351(+) A-I      intronic chr7:155448524(+) A-I      intronic chr7:155522356(+) A-I      intronic chr7:155520597(+) A-I      intronic chr7:155520572(+) A-I      intronic chr7:155520559(+) A-I      intronic chr7:155520498(+) A-I      intronic chr7:155484758(+) A-I      intronic chr7:155484665(+) A-I      intronic chr7:155484660(+) A-I      intronic chr7:155484594(+) A-I      intronic chr7:155484585(+) A-I      intronic chr7:155484566(+) A-I      intronic chr7:155467934(+) A-I      intronic chr7:155467903(+) A-I      intronic chr7:155467843(+) A-I      intronic chr7:155474719(+) A-I      intronic chr7:155566139(+) A-I      intronic chr7:155494521(+) A-I      intronic chr7:155528213(+) A-I      intronic chr7:155566141(+) A-I      intronic chr7:155474744(+) A-I      intronic chr7:155522394(+) A-I      intronic chr7:155566168(+) A-I      intronic chr7:155522368(+) A-I      intronic chr7:155520653(+) A-I      intronic chr7:155474754(+) A-I      intronic chr7:155494511(+) A-I      intronic chr7:155499067(+) A-I      intronic chr7:155474798(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	RBM33	chr7:155444214(+) T-C intron -    22484847 chr7:155474798(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RBM33	chr7:155437425-155437426(+) m6A 5'UTR       24981863 chr7:155437505-155437506(+) m6A 5'UTR       - chr7:155457937-155457938(+) m6A CDS       24981863 chr7:155457943-155457944(+) m6A CDS       24981863 chr7:155465563-155465564(+) m6A CDS       24981863 chr7:155473340-155473341(+) m6A CDS       24981863//27773535//22608085 chr7:155473373-155473374(+) m6A CDS       24284625//24981863//27773535//22608085 chr7:155473391-155473392(+) m6A CDS       24284625//24981863//27773535//22608085 chr7:155473397-155473398(+) m6A CDS       24284625//24981863//27773535//22608085 chr7:155473412-155473413(+) m6A CDS       24284625//24981863//27773535//22608085 chr7:155473468-155473469(+) m1A CDS       26863196 chr7:155473472-155473473(+) m6A CDS       24284625//24981863//27773535//22608085 chr7:155473507-155473508(+) m6A CDS       24284625//24981863//27773535//22608085 chr7:155473513-155473514(+) Tm CDS       - chr7:155473567-155473568(+) m6A CDS       24981863//27773535//22608085 chr7:155473583-155473584(+) m6A CDS       24981863//27773535//22608085 chr7:155477681-155477682(+) m6A CDS//intron       24981863 chr7:155493478-155493479(+) m6A CDS       24981863//27773535 chr7:155493486-155493487(+) m6A CDS       24981863//27773535 chr7:155493497-155493498(+) m6A CDS       24981863//27773535 chr7:155493562-155493563(+) m6A CDS       24981863//27773535 chr7:155493580-155493581(+) m6A CDS       24981863//27773535 chr7:155493620-155493621(+) m6A CDS       24981863//27773535 chr7:155493631-155493632(+) m6A CDS       24981863//27773535 chr7:155499614-155499615(+) m6A CDS//exon       24981863 chr7:155499682-155499683(+) m6A CDS//exon       24981863 chr7:155499721-155499722(+) m6A CDS//exon       24981863 chr7:155499728-155499729(+) m6A CDS//exon       24981863 chr7:155500047-155500048(+) m6A 3'UTR//intron       - chr7:155504046-155504047(+) m6A 3'UTR//CDS//exon       24284625 chr7:155504098-155504099(+) m6A 3'UTR//CDS//exon       24284625 chr7:155511109-155511110(+) m6A 3'UTR//CDS//exon       24284625 chr7:155511121-155511122(+) m6A 3'UTR//CDS//exon       24284625 chr7:155530255-155530256(+) m6A 3'UTR//CDS       24284625 chr7:155530302-155530303(+) m6A 3'UTR//CDS       - chr7:155530338-155530339(+) m6A 3'UTR//CDS       24284625//24981863 chr7:155530763-155530764(+) m6A 3'UTR//CDS       24284625//24981863 chr7:155530793-155530794(+) m6A 3'UTR//CDS       24284625//24981863 chr7:155530889-155530890(+) m6A 3'UTR//CDS       24284625//24981863 chr7:155530910-155530911(+) m6A 3'UTR//CDS       24284625 chr7:155531033-155531034(+) m6A 3'UTR//CDS       24284625 chr7:155531057-155531058(+) m6A 3'UTR//CDS       24284625 chr7:155531115-155531116(+) m6A 3'UTR//intron       24284625 chr7:155532377-155532378(+) m6A 3'UTR//intron       - chr7:155532657-155532658(+) m6A 3'UTR//CDS       24284625//24209618 chr7:155534576-155534577(+) m6A 3'UTR//CDS       - chr7:155534667-155534668(+) m6A 3'UTR//CDS       - chr7:155534788-155534789(+) m6A 3'UTR//CDS       24284625//27773535//22608085 chr7:155534794-155534795(+) m6A 3'UTR//CDS       24284625//27773535//22608085 chr7:155537675-155537676(+) m6A 3'UTR//CDS       24284625//24981863//27773535//22608085 chr7:155537704-155537705(+) m6A 3'UTR//CDS       24284625//24981863//27773535//22608085 chr7:155537734-155537735(+) m6A 3'UTR//CDS       24284625//25456834//24981863//27773535//22575960//22608085 chr7:155537794-155537795(+) m6A 3'UTR//CDS       24284625//25456834//24981863//27773535//22575960//22608085 chr7:155537917-155537918(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr7:155537931-155537932(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr7:155537949-155537950(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr7:155537984-155537985(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr7:155538028-155538029(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr7:155538049-155538050(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr7:155538058-155538059(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr7:155538062-155538063(+) m6A 3'UTR//CDS       24981863 chr7:155538068-155538069(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr7:155538086-155538087(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr7:155538118-155538119(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr7:155538152-155538153(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr7:155538189-155538190(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27371828//22575960//22608085 chr7:155538212-155538213(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27371828//22575960//22608085 chr7:155538227-155538228(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27371828//22575960//22608085 chr7:155539317-155539318(+) m6A 5'UTR//intron       25456834 chr7:155556576-155556577(+) m6A 5'UTR//CDS       24284625//24209618//25456834//22608085 chr7:155559224-155559225(+) m6A CDS       24284625 chr7:155559233-155559234(+) m6A CDS       24284625 chr7:155559339-155559340(+) m6A CDS       24284625 chr7:155559584-155559585(+) m6A 3'UTR//intron       - chr7:155567812-155567813(+) m6A 3'UTR//CDS       24284625//25456834//24981863//22575960//22608085 chr7:155567905-155567906(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr7:155567914-155567915(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr7:155567971-155567972(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr7:155568023-155568024(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr7:155568082-155568083(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr7:155570132-155570133(+) m6A 3'UTR       27773535 chr7:155570170-155570171(+) m6A 3'UTR       24981863//27773535 chr7:155570260-155570261(+) m6A 3'UTR       24981863 chr7:155571340-155571341(+) m6A 3'UTR       - chr7:155572920-155572921(+) Y 3'UTR       26075521

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	RBM33	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus Colon cancer cells     24393600 Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART3-3p
Interactor2: RBM33

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg