Detail Information

Basic Information:


  VIRBase ID:  

VHID00303966

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.6055

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART3-3p:           ZFP3:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART3-3p ZFP3
miRBase
Accession/Entrez ID		 MIMAT0003411 124961
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - ZNF752

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ZFP3
chr17:4983071(+) A-I      intronic
chr17:4985844(+) A-I      intronic
chr17:4983079(+) A-I      intronic
chr17:4983080(+) A-I      intronic
chr17:4983149(+) A-I      intronic
chr17:4985531(+) A-I      intronic
chr17:4985892(+) A-I      intronic
chr17:4983064(+) A-I      intronic
chr17:4986758(+) A-I      intronic
chr17:4985594(+) A-I      intronic
chr17:4996542(+) A-I      3'UTR
chr17:4996606(+) A-I      3'UTR

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ZFP3
chr17:4994932-4994933(+) m6A CDS       24981863
chr17:4994945-4994946(+) m6A CDS       24981863
chr17:4995001-4995002(+) m6A CDS       24981863
chr17:4995052-4995053(+) m6A CDS       24981863
chr17:4995799-4995800(+) m6A CDS       24981863
chr17:4995831-4995832(+) m6A CDS       24981863
chr17:4995844-4995845(+) m6A CDS       24981863
chr17:4995860-4995861(+) m6A CDS       24981863
chr17:4995928-4995929(+) m6A CDS       24981863
chr17:4995935-4995936(+) m6A CDS       24981863
chr17:4995944-4995945(+) m6A CDS       24981863
chr17:4995971-4995972(+) m6A CDS       24981863
chr17:4996011-4996012(+) m6A CDS       24981863
chr17:4996055-4996056(+) m6A CDS       -
chr17:4996083-4996084(+) m6A CDS       24981863
chr17:4996139-4996140(+) m6A CDS       24981863
chr17:4996167-4996168(+) m6A CDS       24981863
chr17:4996559-4996560(+) m6A 3'UTR       24981863
chr17:4996573-4996574(+) m6A 3'UTR       24981863
chr17:4996608-4996609(+) m6A 3'UTR       24981863
chr17:4997317-4997318(+) m6A 3'UTR       25456834//24981863
chr17:4997322-4997323(+) m6A 3'UTR       25456834//24981863
chr17:4997384-4997385(+) m6A 3'UTR       25456834//24981863
chr17:4997429-4997430(+) m6A 3'UTR       25456834//24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ZFP3
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART3-3p
Interactor2: ZFP3

Evidence Support:


Weak-Evidence PAR-CLIP
Prediction-Evidence cRep//miRanda//PARalyzer//PITA//Targetscan
Support Database RepTar//ViRBase//VIRmiRNA//VmiReg

References:


PMID 22291592 Target region 3'UTR
Source RepTar//ViRBase//VIRmiRNA//VmiReg Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression Downregulation
Description We identified 7,827 miRNA-interaction sites in 3,492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.We identified an additional 2,972 CDS miRNA-interaction sites present in at least two libraries, 89.7% of which could be assigned to a miRNA (Table S7).

Starting a new search, please wait ...