Basic Information:

  VIRBase ID:  

VHID00303196

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART3-3p:  MIMAT0003411          PPP1R9A:  NM_001166160     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART3-3p	PPP1R9A
miRBase Accession/Entrez ID	MIMAT0003411	55607
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	Neurabin-I//NRB1//NRBI

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PPP1R9A	chr7:94553953(+) A-I      intronic chr7:94550638(+) A-I      intronic chr7:94784677(+) A-I      intronic chr7:94784643(+) A-I      intronic chr7:94738919(+) A-I      intronic chr7:94637134(+) A-I      intronic chr7:94637128(+) A-I      intronic chr7:94825247(+) A-I      intronic chr7:94825317(+) A-I      intronic chr7:94624112(+) A-I      intronic chr7:94825264(+) A-I      intronic chr7:94789144(+) A-I      intronic chr7:94555170(+) A-I      intronic chr7:94789131(+) A-I      intronic chr7:94921185(+) A-I      3'UTR chr7:94906806(+) A-I      intronic chr7:94716954(+) A-I      intronic chr7:94660921(+) A-I      intronic chr7:94730184(+) A-I      intronic chr7:94716981(+) A-I      intronic chr7:94560944(+) A-I      intronic chr7:94703916(+) A-I      intronic chr7:94732821(+) A-I      intronic chr7:94723930(+) A-I      intronic chr7:94548459(+) A-I      intronic chr7:94691762(+) A-I      intronic chr7:94739035(+) A-I      intronic chr7:94724006(+) A-I      intronic chr7:94763921(+) A-I      intronic chr7:94637185(+) A-I      intronic chr7:94754554(+) A-I      intronic chr7:94635785(+) A-I      intronic chr7:94892827(+) A-I      intronic chr7:94777977(+) A-I      intronic chr7:94550503(+) A-I      intronic chr7:94691784(+) A-I      intronic chr7:94703928(+) A-I      intronic chr7:94645178(+) A-I      intronic chr7:94663926(+) A-I      intronic chr7:94751727(+) A-I      intronic chr7:94624127(+) A-I      intronic chr7:94751633(+) A-I      intronic chr7:94637183(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PPP1R9A	chr7:94539213-94539214(+) m6A 5'UTR       24981863//22608085 chr7:94539397-94539398(+) m6A 5'UTR       24284625//24981863//22608085 chr7:94539434-94539435(+) m6A CDS       24284625//25456834//24981863//22608085 chr7:94539455-94539456(+) m6A CDS       24284625//25456834//24981863//22608085 chr7:94539497-94539498(+) m6A CDS       24284625//25456834//24981863//27773535//22608085 chr7:94539532-94539533(+) m6A CDS       24284625//25456834//24981863//27773535//22608085 chr7:94539550-94539551(+) m6A CDS       24284625//25456834//24981863//27773535//22608085 chr7:94539557-94539558(+) m6A CDS       24284625//24981863//22608085 chr7:94539627-94539628(+) m6A CDS       24284625//24981863//22608085 chr7:94539652-94539653(+) m6A CDS       24284625//24981863//22608085 chr7:94539683-94539684(+) m6A CDS       24284625//24981863//22608085 chr7:94539700-94539701(+) m6A CDS       24284625//24981863//22608085 chr7:94539749-94539750(+) m6A CDS       24284625//24981863//22608085 chr7:94539848-94539849(+) m6A CDS       24284625//24981863//22575960//22608085 chr7:94539886-94539887(+) m6A CDS       24284625//24981863//22575960//22608085 chr7:94539891-94539892(+) m6A CDS       24284625//24981863//22575960//22608085 chr7:94539934-94539935(+) m6A CDS       24284625//24981863//22575960//22608085 chr7:94539990-94539991(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr7:94540007-94540008(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr7:94540056-94540057(+) m6A CDS       24284625//24981863//22575960//22608085 chr7:94540098-94540099(+) m6A CDS       24284625//24981863//26404942//22575960//22608085 chr7:94540209-94540210(+) m6A CDS       24284625//24981863//22608085 chr7:94540330-94540331(+) m6A CDS       24284625//24981863//22608085 chr7:94540338-94540339(+) m6A CDS       24284625//24981863//22608085 chr7:94540358-94540359(+) m6A CDS       24284625//24981863//22608085 chr7:94540393-94540394(+) m6A CDS       24284625//24981863//22608085 chr7:94540513-94540514(+) m6A CDS       24284625//24981863//22575960//22608085 chr7:94540662-94540663(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr7:94540673-94540674(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr7:94540713-94540714(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr7:94740677-94740678(+) m6A CDS       24981863 chr7:94750078-94750079(+) m6A CDS       24981863 chr7:94750106-94750107(+) m6A CDS       24981863 chr7:94791264-94791265(+) m6A CDS       24981863 chr7:94827681-94827682(+) m6A CDS       24981863 chr7:94827687-94827688(+) m6A CDS       24981863 chr7:94827721-94827722(+) m6A CDS       24981863 chr7:94827729-94827730(+) m6A CDS       24981863 chr7:94827759-94827760(+) m6A CDS       24981863 chr7:94855313-94855314(+) m6A CDS       24981863 chr7:94855372-94855373(+) m6A CDS       24981863 chr7:94855391-94855392(+) m6A CDS       24981863 chr7:94855396-94855397(+) m6A CDS       24981863 chr7:94876795-94876796(+) m6A CDS       24981863 chr7:94876832-94876833(+) m6A CDS       24981863//27773535 chr7:94879372-94879373(+) m6A CDS       24981863//27773535 chr7:94879382-94879383(+) m6A CDS       24981863//27773535 chr7:94879398-94879399(+) m6A CDS       24981863//27773535 chr7:94879457-94879458(+) m6A CDS       24981863//27773535 chr7:94879493-94879494(+) m6A CDS       24981863//27773535 chr7:94881094-94881095(+) m6A CDS       24981863 chr7:94881318-94881319(+) m6A CDS       24981863 chr7:94881357-94881358(+) m6A CDS       24981863 chr7:94897884-94897885(+) m6A CDS       24981863 chr7:94897914-94897915(+) m6A CDS       24981863 chr7:94897939-94897940(+) m6A CDS       24981863 chr7:94897952-94897953(+) m6A CDS       24981863 chr7:94897962-94897963(+) m6A CDS       24981863 chr7:94897967-94897968(+) m6A CDS       24981863 chr7:94898002-94898003(+) m6A CDS       24981863 chr7:94918023-94918024(+) m6A CDS//intron       24284625//24981863//27773535 chr7:94919427-94919428(+) m6A CDS       24284625//24981863//27773535//22608085 chr7:94919449-94919450(+) m6A CDS       24284625//25456834//24981863//27773535//22608085 chr7:94919509-94919510(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22608085 chr7:94919567-94919568(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22608085 chr7:94919702-94919703(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr7:94919743-94919744(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr7:94919836-94919837(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr7:94919926-94919927(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr7:94920061-94920062(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr7:94920081-94920082(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr7:94920136-94920137(+) m6A 3'UTR       24284625//24981863//22608085 chr7:94920144-94920145(+) m6A 3'UTR       24284625//24981863//22608085 chr7:94920161-94920162(+) m6A 3'UTR       24284625//24981863//22608085 chr7:94920356-94920357(+) m6A 3'UTR       24981863 chr7:94920376-94920377(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PPP1R9A	Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytosol HCC cell line (HepG2)     - Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Membrane HCC cell line (HepG2)     - Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus Colon cancer cells     24393600 Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART3-3p
Interactor2: PPP1R9A

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//Targetscan
Support Database	RepTar//VmiReg