Detail Information

Basic Information:


  VIRBase ID:  

VHID00301407

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART3-3p:           EPHB4:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART3-3p EPHB4
miRBase
Accession/Entrez ID		 MIMAT0003411 2050
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - CMAVM2//HFASD//HTK//LMPHM7//MYK1//TYRO11

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR EPHB4
chr7:100414135(-) A-I      intronic
chr7:100414149(-) A-I      intronic
chr7:100414151(-) A-I      intronic
chr7:100414205(-) A-I      intronic
chr7:100412833(-) A-I      intronic
chr7:100412837(-) A-I      intronic
chr7:100412850(-) A-I      intronic
chr7:100412869(-) A-I      intronic
chr7:100419566(-) A-I      intronic
chr7:100419128(-) A-I      intronic
chr7:100419062(-) A-I      intronic
chr7:100418925(-) A-I      intronic
chr7:100418917(-) A-I      intronic
chr7:100418606(-) A-I      intronic
chr7:100418579(-) A-I      intronic
chr7:100414667(-) A-I      intronic
chr7:100414661(-) A-I      intronic
chr7:100414658(-) A-I      intronic
chr7:100414512(-) A-I      intronic
chr7:100414160(-) A-I      intronic
chr7:100414088(-) A-I      intronic
chr7:100414023(-) A-I      intronic
chr7:100413515(-) A-I      intronic
chr7:100413387(-) A-I      intronic
chr7:100405912(-) A-I      intronic
chr7:100405949(-) A-I      intronic
chr7:100405965(-) A-I      intronic
chr7:100412015(-) A-I      intronic
chr7:100412044(-) A-I      intronic
chr7:100412093(-) A-I      intronic
chr7:100413352(-) A-I      intronic
chr7:100412895(-) A-I      intronic
chr7:100412095(-) A-I      intronic
chr7:100412059(-) A-I      intronic
chr7:100412028(-) A-I      intronic
chr7:100412000(-) A-I      intronic
chr7:100407700(-) A-I      intronic
chr7:100405478(-) A-I      intronic
chr7:100414061(-) A-I      intronic
chr7:100412877(-) A-I      intronic
chr7:100414174(-) A-I      intronic
chr7:100414199(-) A-I      intronic
chr7:100414228(-) A-I      intronic
chr7:100414229(-) A-I      intronic
chr7:100414244(-) A-I      intronic
chr7:100412094(-) A-I      intronic
chr7:100412024(-) A-I      intronic
chr7:100412032(-) A-I      intronic
chr7:100413482(-) A-I      intronic
chr7:100414202(-) A-I      intronic
chr7:100418634(-) A-I      intronic
chr7:100412082(-) A-I      intronic
chr7:100414093(-) A-I      intronic
chr7:100412633(-) A-I      intronic
chr7:100413548(-) A-I      intronic
chr7:100413388(-) A-I      intronic
chr7:100412939(-) A-I      intronic
chr7:100412037(-) A-I      intronic
chr7:100414246(-) A-I      intronic
chr7:100405494(-) A-I      intronic
chr7:100406906(-) A-I      intronic
chr7:100411968(-) A-I      intronic
chr7:100412876(-) A-I      intronic
chr7:100412064(-) A-I      intronic
chr7:100407329(-) A-I      intronic
chr7:100414538(-) A-I      intronic
chr7:100413755(-) A-I      intronic
chr7:100412544(-) A-I      intronic
chr7:100407809(-) A-I      intronic
chr7:100413435(-) A-I      intronic
chr7:100413397(-) A-I      intronic
chr7:100412011(-) A-I      intronic
chr7:100412769(-) A-I      intronic
chr7:100409325(-) A-I      intronic
chr7:100412942(-) A-I      intronic
chr7:100412577(-) A-I      intronic
chr7:100407538(-) A-I      intronic
chr7:100407391(-) A-I      intronic
chr7:100406796(-) A-I      intronic
chr7:100412883(-) A-I      intronic
chr7:100412088(-) A-I      intronic
chr7:100412617(-) A-I      intronic
chr7:100407330(-) A-I      intronic
chr7:100412817(-) A-I      intronic
chr7:100419286(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase EPHB4
chr7:100400628-100400629(-) m6A 3'UTR//exon       24284625//27773535
chr7:100400758-100400759(-) m6A 3'UTR//exon       24284625//24209618//25456834//27773535//27773536
chr7:100400846-100400847(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27773536
chr7:100400875-100400876(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27773536
chr7:100400882-100400883(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27773536//22575960//22608085
chr7:100400943-100400944(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27773536//22575960//22608085
chr7:100401022-100401023(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27773536//22575960//22608085
chr7:100401056-100401057(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27773536//22575960//22608085
chr7:100401072-100401073(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27773536//22575960//22608085
chr7:100401100-100401101(-) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//22575960
chr7:100401108-100401109(-) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//22575960
chr7:100401120-100401121(-) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//22575960
chr7:100401178-100401179(-) m6A 3'UTR//CDS//exon       22575960
chr7:100401209-100401210(-) m6A 3'UTR//CDS//exon       22575960
chr7:100403161-100403162(-) m6A 3'UTR//CDS//exon       24284625
chr7:100403176-100403177(-) m6A 3'UTR//CDS//exon       24284625//27773535
chr7:100403221-100403222(-) m6A 3'UTR//CDS//exon       24284625//27773535
chr7:100403236-100403237(-) m6A 3'UTR//CDS//exon       24284625
chr7:100403269-100403270(-) m6A 3'UTR//CDS//exon       24284625//27773535
chr7:100403293-100403294(-) m6A 3'UTR//CDS//exon       24284625//27773535
chr7:100403298-100403299(-) m6A 3'UTR//CDS//exon       24284625//27773535
chr7:100403608-100403609(-) m6A exon//intron       27773535
chr7:100410544-100410545(-) m6A 3'UTR//CDS//exon       27773535//27773536
chr7:100410761-100410762(-) Gm 3'UTR//CDS//exon       -
chr7:100410793-100410794(-) m6A 3'UTR//CDS//exon       24209618//24981863//27773535
chr7:100410919-100410920(-) m6A exon//intron       24209618
chr7:100410928-100410929(-) m6A exon//intron       24209618
chr7:100411277-100411278(-) m6A 3'UTR//CDS//exon       24209618//27773535
chr7:100411292-100411293(-) m6A 3'UTR//CDS//exon       24209618//27773535
chr7:100411302-100411303(-) m6A 3'UTR//CDS//exon       24209618//27773535
chr7:100411682-100411683(-) m6A exon//intron       24209618//27773536
chr7:100414825-100414826(-) m6A 3'UTR//CDS//exon//intron       24209618//27773536
chr7:100414838-100414839(-) m6A 3'UTR//CDS//exon//intron       24284625//24209618//27773536
chr7:100414932-100414933(-) m6A CDS//exon       24284625//24209618//27773536
chr7:100416166-100416167(-) m6A CDS//exon//intron       24284625//24209618//27773535
chr7:100417321-100417322(-) m6A CDS//exon//intron       -
chr7:100417348-100417349(-) m6A CDS//exon//intron       -
chr7:100417414-100417415(-) m6A CDS//exon//intron       24284625
chr7:100417785-100417786(-) m6A CDS//exon//intron       24284625
chr7:100420072-100420073(-) m6A CDS//exon       -
chr7:100420092-100420093(-) m6A CDS//exon       22575960
chr7:100420161-100420162(-) m6A CDS//exon       27773536//22575960
chr7:100420199-100420200(-) m6A CDS//exon       27773536//22575960
chr7:100420284-100420285(-) m6A CDS//exon       27773536
chr7:100421278-100421279(-) m6A CDS//exon       27773536
chr7:100421314-100421315(-) m6A CDS//exon       27773536
chr7:100421348-100421349(-) m6A CDS//exon       27773536
chr7:100421523-100421524(-) m6A CDS//exon       27773536
chr7:100421544-100421545(-) m6A CDS//exon       27773536
chr7:100421868-100421869(-) m6A CDS//exon       27773536
chr7:100421882-100421883(-) m6A CDS//exon       27773536
chr7:100421892-100421893(-) m6A CDS//exon       27773536
chr7:100424686-100424687(-) m6A 5'UTR       27773536
chr7:100424711-100424712(-) m6A 5'UTR       27773536
chr7:100424922-100424923(-) m6A 5'UTR       24209618//25456834//24981863//27773536
chr7:100424941-100424942(-) m6A 5'UTR       24209618//25456834//24981863//27773536
chr7:100424981-100424982(-) m6A 5'UTR       24209618//25456834//24981863//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate EPHB4
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)|K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells|K562 cells     -
Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART3-3p
Interactor2: EPHB4

Evidence Support:


Prediction-Evidence cRep//miRanda
Support Database RepTar//VmiReg

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