Basic Information:

  VIRBase ID:  

VHID00301168

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART3-3p:  MIMAT0003411          ABCF1:  NM_001025091     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART3-3p	ABCF1
miRBase Accession/Entrez ID	MIMAT0003411	23
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	ABC27//ABC50

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ABCF1	chr6:30557233(+) A-I      intronic chr6:30557345(+) A-I      intronic chr6:30548069(+) A-I      intronic chr6:30547942(+) A-I      intronic chr6:30547432(+) A-I      intronic chr6:30547387(+) A-I      intronic chr6:30547267(+) A-I      intronic chr6:30555337(+) A-I      intronic chr6:30555468(+) A-I      intronic chr6:30555470(+) A-I      intronic chr6:30555475(+) A-I      intronic chr6:30555479(+) A-I      intronic chr6:30555511(+) A-I      intronic chr6:30555522(+) A-I      intronic chr6:30556937(+) A-I      intronic chr6:30556300(+) A-I      intronic chr6:30556243(+) A-I      intronic chr6:30556202(+) A-I      intronic chr6:30556200(+) A-I      intronic chr6:30547364(+) A-I      intronic chr6:30555930(+) A-I      intronic chr6:30555889(+) A-I      intronic chr6:30555880(+) A-I      intronic chr6:30555869(+) A-I      intronic chr6:30555773(+) A-I      intronic chr6:30555766(+) A-I      intronic chr6:30555537(+) A-I      intronic chr6:30555515(+) A-I      intronic chr6:30555327(+) A-I      intronic chr6:30555324(+) A-I      intronic chr6:30555291(+) A-I      intronic chr6:30555264(+) A-I      intronic chr6:30555235(+) A-I      intronic chr6:30555211(+) A-I      intronic chr6:30555160(+) A-I      intronic chr6:30554968(+) A-I      intronic chr6:30554904(+) A-I      intronic chr6:30554817(+) A-I      intronic chr6:30554780(+) A-I      intronic chr6:30546698(+) A-I      intronic chr6:30546634(+) A-I      intronic chr6:30546568(+) A-I      intronic chr6:30546559(+) A-I      intronic chr6:30546555(+) A-I      intronic chr6:30544182(+) A-I      intronic chr6:30544168(+) A-I      intronic chr6:30544165(+) A-I      intronic chr6:30544144(+) A-I      intronic chr6:30544123(+) A-I      intronic chr6:30543871(+) A-I      intronic chr6:30543870(+) A-I      intronic chr6:30543811(+) A-I      intronic chr6:30543800(+) A-I      intronic chr6:30543744(+) A-I      intronic chr6:30543665(+) A-I      intronic chr6:30543657(+) A-I      intronic chr6:30543651(+) A-I      intronic chr6:30543057(+) A-I      intronic chr6:30543056(+) A-I      intronic chr6:30543032(+) A-I      intronic chr6:30541993(+) A-I      intronic chr6:30541983(+) A-I      intronic chr6:30541957(+) A-I      intronic chr6:30540540(+) A-I      intronic chr6:30557362(+) A-I      intronic chr6:30556170(+) A-I      intronic chr6:30556959(+) A-I      intronic chr6:30556985(+) A-I      intronic chr6:30552599(+) A-I      intronic chr6:30557193(+) A-I      intronic chr6:30557217(+) A-I      intronic chr6:30557223(+) A-I      intronic chr6:30556945(+) A-I      intronic chr6:30556942(+) A-I      intronic chr6:30554923(+) A-I      intronic chr6:30556965(+) A-I      intronic chr6:30554774(+) A-I      intronic chr6:30554910(+) A-I      intronic chr6:30556806(+) A-I      intronic chr6:30555252(+) A-I      intronic chr6:30557169(+) A-I      intronic chr6:30554908(+) A-I      intronic chr6:30546615(+) A-I      intronic chr6:30545374(+) A-I      intronic chr6:30543730(+) A-I      intronic chr6:30543575(+) A-I      intronic chr6:30540500(+) A-I      intronic chr6:30544340(+) A-I      intronic chr6:30555841(+) A-I      intronic chr6:30556320(+) A-I      intronic chr6:30555464(+) A-I      intronic chr6:30555465(+) A-I      intronic chr6:30552554(+) A-I      intronic chr6:30555780(+) A-I      intronic chr6:30557286(+) A-I      intronic chr6:30554850(+) A-I      intronic chr6:30554919(+) A-I      intronic chr6:30554841(+) A-I      intronic chr6:30556807(+) A-I      intronic chr6:30556343(+) A-I      intronic chr6:30556162(+) A-I      intronic chr6:30543092(+) A-I      intronic chr6:30547415(+) A-I      intronic chr6:30556905(+) A-I      intronic chr6:30540513(+) A-I      intronic chr6:30546657(+) A-I      intronic chr6:30556973(+) A-I      intronic chr6:30543790(+) A-I      intronic chr6:30542197(+) A-I      intronic chr6:30555558(+) A-I      intronic chr6:30555860(+) A-I      intronic chr6:30555260(+) A-I      intronic chr6:30544301(+) A-I      intronic chr6:30546656(+) A-I      intronic chr6:30547935(+) A-I      intronic chr6:30543645(+) A-I      intronic chr6:30555268(+) A-I      intronic chr6:30543569(+) A-I      intronic chr6:30555072(+) A-I      intronic chr6:30554783(+) A-I      intronic chr6:30540499(+) A-I      intronic chr6:30540406(+) A-I      intronic chr6:30555467(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ABCF1	chr6:30545208-30545209(+) m1A CDS//intron       26863196//26863410 chr6:30545212-30545213(+) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085 chr6:30545623-30545624(+) m6A 5'UTR//CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr6:30545637-30545638(+) m1A 5'UTR//CDS       26863196 chr6:30545891-30545892(+) m1A 5'UTR//CDS       26863196 chr6:30546137-30546138(+) m6A CDS//exon       24284625//24209618//24981863//27773535//22575960 chr6:30546156-30546157(+) m6A CDS//exon       24284625//24209618//24981863//27773535//22575960 chr6:30546188-30546189(+) m6A exon//intron       24284625//24209618//24981863//27773535//22575960 chr6:30546308-30546309(+) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr6:30547721-30547722(+) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr6:30548207-30548208(+) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr6:30548231-30548232(+) m1A CDS       26863196 chr6:30548262-30548263(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr6:30550183-30550184(+) m1A CDS//intron       26863196 chr6:30550198-30550199(+) m1A CDS//intron       26863196 chr6:30550280-30550281(+) m6A CDS//intron       24284625//25456834//24981863//27773535//22608085 chr6:30550281-30550282(+) Cm CDS//intron       - chr6:30551436-30551437(+) m6A CDS       24284625//22575960 chr6:30551476-30551477(+) m6A CDS       24284625//22575960 chr6:30551591-30551592(+) m6A CDS       24284625//22575960 chr6:30551985-30551986(+) m6A CDS       24284625//22575960 chr6:30552062-30552063(+) m6A CDS       24284625//24981863//22575960 chr6:30552071-30552072(+) m6A CDS       24284625//24981863//22575960 chr6:30553092-30553093(+) m6A CDS       24284625 chr6:30553692-30553693(+) m6A CDS       24981863//27773535 chr6:30553701-30553702(+) m6A CDS       24981863//27773535 chr6:30553915-30553916(+) m6A CDS       24981863//27773535 chr6:30553965-30553966(+) m6A CDS       24981863//22575960 chr6:30554043-30554044(+) m6A CDS       22575960 chr6:30554272-30554273(+) m6A CDS       22575960 chr6:30554278-30554279(+) m6A CDS       22575960 chr6:30554292-30554293(+) m6A CDS       - chr6:30557743-30557744(+) m6A CDS//exon       24284625//22575960 chr6:30557971-30557972(+) m6A CDS//exon       24284625//22575960 chr6:30558104-30558105(+) m6A CDS//exon       24284625//22575960 chr6:30558352-30558353(+) m6A CDS//exon       24284625//24209618//22575960 chr6:30558416-30558417(+) m6A CDS//exon       24284625//24209618//24981863//22575960//22608085 chr6:30558506-30558507(+) m6A 3'UTR//exon       24284625//24209618//24981863//22575960//22608085 chr6:30558555-30558556(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr6:30558663-30558664(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr6:30558724-30558725(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr6:30558793-30558794(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr6:30558912-30558913(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr6:30559008-30559009(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr6:30559036-30559037(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr6:30559122-30559123(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ABCF1	Chromatin K562 cells     - Cytosol K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Membrane HCC cell line (HepG2)|K562 cells     - Nucleolus K562 cells     - Nucleus Colon cancer cells     24393600 Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART3-3p
Interactor2: ABCF1

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg