Basic Information:

  VIRBase ID:  

VHID00301090

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.5711

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART3-5p:  MIMAT0003410          FRRS1:  NM_001013660     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART3-5p	FRRS1
miRBase Accession/Entrez ID	MIMAT0003410	391059
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	SDFR2//SDR2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	FRRS1	chr1:100184078(-) A-I      intronic chr1:100205093(-) A-I      intronic chr1:100231035(-) A-I      5'UTR chr1:100203401(-) A-I      intronic chr1:100197455(-) A-I      intronic chr1:100226883(-) A-I      intronic chr1:100229385(-) A-I      intronic chr1:100229349(-) A-I      intronic chr1:100229324(-) A-I      intronic chr1:100229214(-) A-I      intronic chr1:100226903(-) A-I      intronic chr1:100203518(-) A-I      intronic chr1:100188978(-) A-I      intronic chr1:100196468(-) A-I      intronic chr1:100189010(-) A-I      intronic chr1:100196025(-) A-I      intronic chr1:100196074(-) A-I      intronic chr1:100196027(-) A-I      intronic chr1:100196098(-) A-I      intronic chr1:100203569(-) A-I      intronic chr1:100203493(-) A-I      intronic chr1:100214702(-) A-I      intronic chr1:100184797(-) A-I      intronic chr1:100184178(-) A-I      intronic chr1:100196105(-) A-I      intronic chr1:100194172(-) A-I      NonSyn:Arg->Gly chr1:100184802(-) A-I      intronic chr1:100197441(-) A-I      intronic chr1:100196060(-) A-I      intronic chr1:100230995(-) A-I      5'UTR chr1:100200719(-) A-I      intronic chr1:100186924(-) A-I      intronic chr1:100196075(-) A-I      intronic chr1:100184013(-) A-I      intronic chr1:100196111(-) A-I      intronic chr1:100197448(-) A-I      intronic chr1:100186769(-) A-I      intronic chr1:100196033(-) A-I      intronic chr1:100214664(-) A-I      intronic chr1:100187832(-) A-I      intronic chr1:100196056(-) A-I      intronic chr1:100203436(-) A-I      intronic chr1:100184079(-) A-I      intronic chr1:100198452(-) A-I      intronic chr1:100184023(-) A-I      intronic chr1:100184785(-) A-I      intronic chr1:100184799(-) A-I      intronic chr1:100197522(-) A-I      intronic chr1:100229208(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	FRRS1	chr1:100194172(-) A-I exon CDS    21960545 chr1:100184013(-) A-G intron -    22484847 chr1:100184023(-) A-G intron -    22484847 chr1:100184079(-) A-G intron -    22484847 chr1:100184785(-) A-G intron -    22484847 chr1:100184797(-) A-G intron -    22484847 chr1:100186769(-) A-G intron -    22484847 chr1:100186924(-) A-G intron -    22484847 chr1:100187832(-) A-G intron -    22484847 chr1:100196056(-) A-G intron -    22484847 chr1:100196060(-) A-G intron -    22484847 chr1:100196075(-) A-G intron -    22484847 chr1:100196422(-) G-T intron -    22484847 chr1:100197441(-) A-G intron -    22484847 chr1:100197448(-) A-G intron -    22484847 chr1:100203436(-) A-G intron -    22484847 chr1:100203493(-) A-G intron -    22484847 chr1:100203569(-) A-G intron -    22484847 chr1:100214702(-) A-G intron -    22484847 chr1:100230995(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	FRRS1	chr1:100174400-100174401(-) m6A 3'UTR       22608085 chr1:100174424-100174425(-) m6A 3'UTR       24981863//22608085 chr1:100174471-100174472(-) m6A CDS       24209618//24981863//22608085 chr1:100174525-100174526(-) m6A CDS       24209618//24981863//22608085 chr1:100174534-100174535(-) m6A CDS       24981863//22608085 chr1:100174572-100174573(-) m6A CDS       22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	FRRS1	Chromatin K562 cells     - Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART3-5p
Interactor2: FRRS1

Evidence Support:

Weak-Evidence	PAR-CLIP
Prediction-Evidence	PARalyzer
Support Database	ViRBase//VIRmiRNA

References:

[1]PMID	22100165	Target region	3'UTR
Source	ViRBase//VIRmiRNA	Interactor1 expression	None
Tissue or cell line	BC-1 cells	Interactor2 expression	None
Description	Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites.Clusters with seed matches to expressed miRNAs were considered candidate target sites. Of the clusters mapping to human 3'UTRs, 69% (BC-1) and 70% (BC-3) had seed matches to expressed miRNAs (Tables S6).Table S6A BC-1 derived 3'UTR clusters with seed matches to expressed miRNAs.

[2]PMID	22291592	Target region	3'UTR
Source	ViRBase//VIRmiRNA	Interactor1 expression	None
Tissue or cell line	EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells	Interactor2 expression	None
Description	We identified 7,827 miRNA-interaction sites in 3,492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.We identified an additional 2,972 CDS miRNA-interaction sites present in at least two libraries, 89.7% of which could be assigned to a miRNA (Table S7).