Basic Information:

  VIRBase ID:  

VHID00300309

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART3-5p:  MIMAT0003410          NENF:  NR_026598     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART3-5p	NENF
miRBase Accession/Entrez ID	MIMAT0003410	29937
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CIR2//SCIRP10//SPUF

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	NENF	chr1:212615049(+) A-I      intronic chr1:212615048(+) A-I      intronic chr1:212615045(+) A-I      intronic chr1:212617305(+) A-I      intronic chr1:212617161(+) A-I      intronic chr1:212617306(+) A-I      intronic chr1:212617152(+) A-I      intronic chr1:212615080(+) A-I      intronic chr1:212615073(+) A-I      intronic chr1:212617202(+) A-I      intronic chr1:212615021(+) A-I      intronic chr1:212615007(+) A-I      intronic chr1:212612961(+) A-I      intronic chr1:212617210(+) A-I      intronic chr1:212612957(+) A-I      intronic chr1:212615543(+) A-I      intronic chr1:212615537(+) A-I      intronic chr1:212613447(+) A-I      intronic chr1:212612194(+) A-I      intronic chr1:212613000(+) A-I      intronic chr1:212609722(+) A-I      intronic chr1:212609727(+) A-I      intronic chr1:212616210(+) A-I      intronic chr1:212611271(+) A-I      intronic chr1:212614951(+) A-I      intronic chr1:212612206(+) A-I      intronic chr1:212616293(+) A-I      intronic chr1:212612999(+) A-I      intronic chr1:212612098(+) A-I      intronic chr1:212615008(+) A-I      intronic chr1:212617130(+) A-I      intronic chr1:212616861(+) A-I      intronic chr1:212617114(+) A-I      intronic chr1:212616967(+) A-I      intronic chr1:212615563(+) A-I      intronic chr1:212615393(+) A-I      intronic chr1:212616326(+) A-I      intronic chr1:212616864(+) A-I      intronic chr1:212615017(+) A-I      intronic chr1:212613082(+) A-I      intronic chr1:212616343(+) A-I      intronic chr1:212616345(+) A-I      intronic chr1:212614981(+) A-I      intronic chr1:212616188(+) A-I      intronic chr1:212614946(+) A-I      intronic chr1:212613010(+) A-I      intronic chr1:212612036(+) A-I      intronic chr1:212612193(+) A-I      intronic chr1:212617315(+) A-I      intronic chr1:212616357(+) A-I      intronic chr1:212613487(+) A-I      intronic chr1:212616865(+) A-I      intronic chr1:212613455(+) A-I      intronic chr1:212613361(+) A-I      intronic chr1:212613444(+) A-I      intronic chr1:212613436(+) A-I      intronic chr1:212613479(+) A-I      intronic chr1:212613432(+) A-I      intronic chr1:212613398(+) A-I      intronic chr1:212613539(+) A-I      intronic chr1:212615454(+) A-I      intronic chr1:212613544(+) A-I      intronic chr1:212613438(+) A-I      intronic chr1:212613443(+) A-I      intronic chr1:212613500(+) A-I      intronic chr1:212613474(+) A-I      intronic chr1:212613435(+) A-I      intronic chr1:212613441(+) A-I      intronic chr1:212613410(+) A-I      intronic chr1:212609753(+) A-I      intronic chr1:212610148(+) A-I      intronic chr1:212615493(+) A-I      intronic chr1:212616351(+) A-I      intronic chr1:212616937(+) A-I      intronic chr1:212617144(+) A-I      intronic chr1:212614967(+) A-I      intronic chr1:212612062(+) A-I      intronic chr1:212616828(+) A-I      intronic chr1:212613081(+) A-I      intronic chr1:212613473(+) A-I      intronic chr1:212613059(+) A-I      intronic chr1:212616915(+) A-I      intronic chr1:212616185(+) A-I      intronic chr1:212609915(+) A-I      intronic chr1:212616836(+) A-I      intronic chr1:212611890(+) A-I      intronic chr1:212613122(+) A-I      intronic chr1:212615043(+) A-I      intronic chr1:212616344(+) A-I      intronic chr1:212613514(+) A-I      intronic chr1:212615556(+) A-I      intronic chr1:212610238(+) A-I      intronic chr1:212617112(+) A-I      intronic chr1:212616968(+) A-I      intronic chr1:212612763(+) A-I      intronic chr1:212614877(+) A-I      intronic chr1:212617273(+) A-I      intronic chr1:212617006(+) A-I      intronic chr1:212616796(+) A-I      intronic chr1:212612826(+) A-I      intronic chr1:212616852(+) A-I      intronic chr1:212611240(+) A-I      intronic chr1:212609769(+) A-I      intronic chr1:212614917(+) A-I      intronic chr1:212615385(+) A-I      intronic chr1:212612674(+) A-I      intronic chr1:212612020(+) A-I      intronic chr1:212617233(+) A-I      intronic chr1:212616294(+) A-I      intronic chr1:212612211(+) A-I      intronic chr1:212610752(+) A-I      intronic chr1:212611280(+) A-I      intronic chr1:212609932(+) A-I      intronic chr1:212616954(+) A-I      intronic chr1:212617235(+) A-I      intronic chr1:212617190(+) A-I      intronic chr1:212613483(+) A-I      intronic chr1:212612006(+) A-I      intronic chr1:212617240(+) A-I      intronic chr1:212616912(+) A-I      intronic chr1:212617344(+) A-I      intronic chr1:212612088(+) A-I      intronic chr1:212613433(+) A-I      intronic chr1:212617108(+) A-I      intronic chr1:212617303(+) A-I      intronic chr1:212612937(+) A-I      intronic chr1:212615118(+) A-I      intronic chr1:212610251(+) A-I      intronic chr1:212617239(+) A-I      intronic chr1:212609791(+) A-I      intronic chr1:212611889(+) A-I      intronic chr1:212615431(+) A-I      intronic chr1:212615483(+) A-I      intronic chr1:212617238(+) A-I      intronic chr1:212608034(+) A-I      intronic chr1:212610354(+) A-I      intronic chr1:212616146(+) A-I      intronic chr1:212617226(+) A-I      intronic chr1:212614863(+) A-I      intronic chr1:212617232(+) A-I      intronic chr1:212617283(+) A-I      intronic chr1:212617024(+) A-I      intronic chr1:212612142(+) A-I      intronic chr1:212612805(+) A-I      intronic chr1:212615458(+) A-I      intronic chr1:212611896(+) A-I      intronic chr1:212615457(+) A-I      intronic chr1:212617185(+) A-I      intronic chr1:212617153(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	NENF	chr1:212613361(+) A-I intron -    22028664 chr1:212613398(+) A-I intron -    22028664 chr1:212613410(+) A-I intron -    22028664 chr1:212613432(+) A-I intron -    22028664 chr1:212613435(+) A-I intron -    22028664 chr1:212613436(+) A-I intron -    22028664 chr1:212613438(+) A-I intron -    22028664 chr1:212613441(+) A-I intron -    22028664 chr1:212613443(+) A-I intron -    22028664 chr1:212613444(+) A-I intron -    22028664 chr1:212613455(+) A-I intron -    22028664 chr1:212613473(+) A-I intron -    22028664 chr1:212613474(+) A-I intron -    22028664 chr1:212613479(+) A-I intron -    22028664 chr1:212613483(+) A-I intron -    22028664 chr1:212613487(+) A-I intron -    22028664 chr1:212613500(+) A-I intron -    22028664 chr1:212613514(+) A-I intron -    22028664 chr1:212613539(+) A-I intron -    22028664 chr1:212613544(+) A-I intron -    22028664 chr1:212610148(+) A-G intron -    22484847 chr1:212611280(+) A-G intron -    22484847 chr1:212611879(+) T-C intron -    22484847 chr1:212611889(+) A-G intron -    22484847 chr1:212612020(+) A-G intron -    22484847 chr1:212612142(+) A-G intron -    22484847 chr1:212614967(+) A-G intron -    22484847 chr1:212615431(+) A-G intron -    22484847 chr1:212616146(+) A-G intron -    22484847 chr1:212616185(+) A-G intron -    22484847 chr1:212616294(+) A-G intron -    22484847 chr1:212616351(+) A-G intron -    22484847 chr1:212617273(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	NENF	chr1:212606384-212606385(+) m6A CDS//exon       - chr1:212617725-212617726(+) m6A CDS//exon       26404942 chr1:212617767-212617768(+) m6A CDS//exon       26404942 chr1:212619191-212619192(+) m6A CDS//exon       26404942 chr1:212619298-212619299(+) m6A CDS//exon       24284625//26404942//22575960 chr1:212619313-212619314(+) m6A CDS//exon       24284625//26404942//22575960 chr1:212619382-212619383(+) Gm 3'UTR//exon       - chr1:212619393-212619394(+) m6A 3'UTR//exon       24284625//24981863//22575960 chr1:212619419-212619420(+) m6A 3'UTR//exon       24284625//24981863//22575960 chr1:212619461-212619462(+) m6A 3'UTR//exon       24284625//24981863//22575960//22608085 chr1:212619529-212619530(+) m6A 3'UTR//exon       24284625//24981863//22608085 chr1:212619571-212619572(+) m6A 3'UTR//exon       24284625//24209618//24981863//22608085 chr1:212619689-212619690(+) m6A 3'UTR//exon       24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	NENF	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART3-5p
Interactor2: NENF

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg