Basic Information:

  VIRBase ID:  

VHID00300284

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART3-5p:  MIMAT0003410          RBMS3:  NM_001003792     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART3-5p	RBMS3
miRBase Accession/Entrez ID	MIMAT0003410	27303
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	RBMS3	chr3:29858455(+) A-I      intronic chr3:29858484(+) A-I      intronic chr3:29858896(+) A-I      intronic chr3:29858905(+) A-I      intronic chr3:29858976(+) A-I      intronic chr3:29567918(+) A-I      intronic chr3:29861632(+) A-I      intronic chr3:29858876(+) A-I      intronic chr3:29858861(+) A-I      intronic chr3:29731755(+) A-I      intronic chr3:29731754(+) A-I      intronic chr3:29731745(+) A-I      intronic chr3:29861732(+) A-I      intronic chr3:29861579(+) A-I      intronic chr3:29731677(+) A-I      intronic chr3:29572269(+) A-I      intronic chr3:29572259(+) A-I      intronic chr3:29572252(+) A-I      intronic chr3:29890757(+) A-I      intronic chr3:29572216(+) A-I      intronic chr3:29572213(+) A-I      intronic chr3:29890874(+) A-I      intronic chr3:29890884(+) A-I      intronic chr3:29890885(+) A-I      intronic chr3:29902380(+) A-I      intronic chr3:29904212(+) A-I      intronic chr3:29572204(+) A-I      intronic chr3:29589521(+) A-I      intronic chr3:29572203(+) A-I      intronic chr3:29569731(+) A-I      intronic chr3:29569729(+) A-I      intronic chr3:29569708(+) A-I      intronic chr3:29589485(+) A-I      intronic chr3:29574830(+) A-I      intronic chr3:29572275(+) A-I      intronic chr3:29904228(+) A-I      intronic chr3:29655478(+) A-I      intronic chr3:29567897(+) A-I      intronic chr3:29567891(+) A-I      intronic chr3:29567865(+) A-I      intronic chr3:29567792(+) A-I      intronic chr3:29567765(+) A-I      intronic chr3:29567757(+) A-I      intronic chr3:29566505(+) A-I      intronic chr3:29566449(+) A-I      intronic chr3:29566379(+) A-I      intronic chr3:29566297(+) A-I      intronic chr3:29566294(+) A-I      intronic chr3:29566169(+) A-I      intronic chr3:29565996(+) A-I      intronic chr3:29962357(+) A-I      intronic chr3:29572248(+) A-I      intronic chr3:29572243(+) A-I      intronic chr3:29572212(+) A-I      intronic chr3:29572209(+) A-I      intronic chr3:29565463(+) A-I      intronic chr3:29565326(+) A-I      intronic chr3:29565289(+) A-I      intronic chr3:29565281(+) A-I      intronic chr3:29559021(+) A-I      intronic chr3:29558996(+) A-I      intronic chr3:29558931(+) A-I      intronic chr3:29572205(+) A-I      intronic chr3:29558597(+) A-I      intronic chr3:29572136(+) A-I      intronic chr3:29572089(+) A-I      intronic chr3:29570509(+) A-I      intronic chr3:29570497(+) A-I      intronic chr3:29570482(+) A-I      intronic chr3:29569824(+) A-I      intronic chr3:29569810(+) A-I      intronic chr3:29558589(+) A-I      intronic chr3:29558566(+) A-I      intronic chr3:29558553(+) A-I      intronic chr3:29558538(+) A-I      intronic chr3:29536998(+) A-I      intronic chr3:29524765(+) A-I      intronic chr3:29488549(+) A-I      intronic chr3:29488533(+) A-I      intronic chr3:29433565(+) A-I      intronic chr3:29655387(+) A-I      intronic chr3:29655398(+) A-I      intronic chr3:29655400(+) A-I      intronic chr3:29429132(+) A-I      intronic chr3:29413775(+) A-I      intronic chr3:29405160(+) A-I      intronic chr3:29655479(+) A-I      intronic chr3:29655486(+) A-I      intronic chr3:29655487(+) A-I      intronic chr3:29655502(+) A-I      intronic chr3:29655471(+) A-I      intronic chr3:30030206(+) A-I      intronic chr3:29962315(+) A-I      intronic chr3:29962314(+) A-I      intronic chr3:29742700(+) A-I      intronic chr3:29754013(+) A-I      intronic chr3:29569804(+) A-I      intronic chr3:29568007(+) A-I      intronic chr3:29567944(+) A-I      intronic chr3:29731739(+) A-I      intronic chr3:29731663(+) A-I      intronic chr3:29731410(+) A-I      intronic chr3:29567932(+) A-I      intronic chr3:29567924(+) A-I      intronic chr3:29567921(+) A-I      intronic chr3:29567905(+) A-I      intronic chr3:29567901(+) A-I      intronic chr3:29655407(+) A-I      intronic chr3:29655408(+) A-I      intronic chr3:29655435(+) A-I      intronic chr3:29655438(+) A-I      intronic chr3:29655450(+) A-I      intronic chr3:29655454(+) A-I      intronic chr3:29655469(+) A-I      intronic chr3:29731393(+) A-I      intronic chr3:29731392(+) A-I      intronic chr3:29731381(+) A-I      intronic chr3:29731361(+) A-I      intronic chr3:29731322(+) A-I      intronic chr3:29731307(+) A-I      intronic chr3:29731299(+) A-I      intronic chr3:29731293(+) A-I      intronic chr3:29730319(+) A-I      intronic chr3:29970179(+) A-I      intronic chr3:29551957(+) A-I      intronic chr3:29493586(+) A-I      intronic chr3:29754024(+) A-I      intronic chr3:29754039(+) A-I      intronic chr3:29780832(+) A-I      intronic chr3:29705808(+) A-I      intronic chr3:29705752(+) A-I      intronic chr3:29705747(+) A-I      intronic chr3:29705732(+) A-I      intronic chr3:29700515(+) A-I      intronic chr3:29408073(+) A-I      intronic chr3:29700484(+) A-I      intronic chr3:29700459(+) A-I      intronic chr3:29636770(+) A-I      intronic chr3:29636706(+) A-I      intronic chr3:29636618(+) A-I      intronic chr3:29753863(+) A-I      intronic chr3:29861625(+) A-I      intronic chr3:29861622(+) A-I      intronic chr3:29780850(+) A-I      intronic chr3:29780853(+) A-I      intronic chr3:29861499(+) A-I      intronic chr3:29780897(+) A-I      intronic chr3:29780907(+) A-I      intronic chr3:29829923(+) A-I      intronic chr3:29834496(+) A-I      intronic chr3:29834628(+) A-I      intronic chr3:29835930(+) A-I      intronic chr3:29858427(+) A-I      intronic chr3:29861479(+) A-I      intronic chr3:29589716(+) A-I      intronic chr3:29655466(+) A-I      intronic chr3:29654756(+) A-I      intronic chr3:29861476(+) A-I      intronic chr3:29861466(+) A-I      intronic chr3:29861457(+) A-I      intronic chr3:29861452(+) A-I      intronic chr3:29861447(+) A-I      intronic chr3:29861432(+) A-I      intronic chr3:29861431(+) A-I      intronic chr3:29904247(+) A-I      intronic chr3:29962313(+) A-I      intronic chr3:29858879(+) A-I      intronic chr3:29902561(+) A-I      intronic chr3:29589870(+) A-I      intronic chr3:29858824(+) A-I      intronic chr3:29488469(+) A-I      intronic chr3:29731783(+) A-I      intronic chr3:29834643(+) A-I      intronic chr3:29858860(+) A-I      intronic chr3:29782349(+) A-I      intronic chr3:29558458(+) A-I      intronic chr3:29962212(+) A-I      intronic chr3:29418588(+) A-I      intronic chr3:29537094(+) A-I      intronic chr3:29730235(+) A-I      intronic chr3:29567773(+) A-I      intronic chr3:29566209(+) A-I      intronic chr3:29858435(+) A-I      intronic chr3:29904188(+) A-I      intronic chr3:29731830(+) A-I      intronic chr3:29566036(+) A-I      intronic chr3:29782443(+) A-I      intronic chr3:29730346(+) A-I      intronic chr3:29569697(+) A-I      intronic chr3:29405215(+) A-I      intronic chr3:29834573(+) A-I      intronic chr3:29834580(+) A-I      intronic chr3:29537101(+) A-I      intronic chr3:29742674(+) A-I      intronic chr3:29861575(+) A-I      intronic chr3:29558555(+) A-I      intronic chr3:29904193(+) A-I      intronic chr3:29858836(+) A-I      intronic chr3:29558063(+) A-I      intronic chr3:29405134(+) A-I      intronic chr3:29858877(+) A-I      intronic chr3:29730216(+) A-I      intronic chr3:29537036(+) A-I      intronic chr3:29731316(+) A-I      intronic chr3:29537048(+) A-I      intronic chr3:29566218(+) A-I      intronic chr3:29605488(+) A-I      intronic chr3:29730355(+) A-I      intronic chr3:29731866(+) A-I      intronic chr3:29730248(+) A-I      intronic chr3:29558940(+) A-I      intronic chr3:29731861(+) A-I      intronic chr3:29558060(+) A-I      intronic chr3:29408128(+) A-I      intronic chr3:29558629(+) A-I      intronic chr3:29782277(+) A-I      intronic chr3:29858834(+) A-I      intronic chr3:29890765(+) A-I      intronic chr3:29782321(+) A-I      intronic chr3:29558061(+) A-I      intronic chr3:29731847(+) A-I      intronic chr3:29861727(+) A-I      intronic chr3:29524807(+) A-I      intronic chr3:29537046(+) A-I      intronic chr3:29531403(+) A-I      intronic chr3:29962211(+) A-I      intronic chr3:29558430(+) A-I      intronic chr3:29731838(+) A-I      intronic chr3:29858371(+) A-I      intronic chr3:29405033(+) A-I      intronic chr3:29782438(+) A-I      intronic chr3:29731789(+) A-I      intronic chr3:29566362(+) A-I      intronic chr3:29570418(+) A-I      intronic chr3:29731844(+) A-I      intronic chr3:29858395(+) A-I      intronic chr3:29574844(+) A-I      intronic chr3:29566441(+) A-I      intronic chr3:29731810(+) A-I      intronic chr3:29731781(+) A-I      intronic chr3:29569743(+) A-I      intronic chr3:29730254(+) A-I      intronic chr3:29731794(+) A-I      intronic chr3:29566305(+) A-I      intronic chr3:29834564(+) A-I      intronic chr3:29731740(+) A-I      intronic chr3:29558183(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	RBMS3	chr3:29782277(+) A-I intron -    15342557   //15258596 chr3:29782321(+) A-I intron -    15342557   //15258596 chr3:29782349(+) A-I intron -    15342557   //15258596 chr3:29782438(+) A-I intron -    15342557   //15258596 chr3:29782443(+) A-I intron -    15342557   //15258596 chr3:29782444(+) A-I intron -    15342557   //15258596 chr3:29782511(+) A-I intron -    15342557   //15258596 chr3:29784510(+) A-I intron -    15342557 chr3:29785411(+) A-I intron -    15342557 chr3:29654689(+) A-G intron -    22484847 chr3:29405134(+) A-G intron -    22484847 chr3:29439247(+) T-C intron -    22484847 chr3:29557984(+) A-G intron -    22484847 chr3:29558060(+) A-G intron -    22484847 chr3:29558061(+) A-G intron -    22484847 chr3:29589415(+) A-G intron -    22484847 chr3:29705807(+) T-C intron -    22484847 chr3:29730167(+) A-G intron -    22484847 chr3:29730216(+) A-G intron -    22484847 chr3:29730254(+) A-G intron -    22484847 chr3:29731794(+) A-G intron -    22484847 chr3:29858371(+) A-G intron -    22484847 chr3:29858836(+) A-G intron -    22484847 chr3:29858860(+) A-G intron -    22484847 chr3:29858958(+) A-G intron -    22484847 chr3:29866548(+) G-T intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RBMS3	chr3:29322540-29322541(+) m6A 5'UTR       - chr3:29322545-29322546(+) m6A 5'UTR       - chr3:29322556-29322557(+) m6A 5'UTR       - chr3:29322742-29322743(+) m6A 5'UTR//exon       24981863 chr3:29322753-29322754(+) m6A 5'UTR//exon       24981863 chr3:29322795-29322796(+) m6A 5'UTR//exon       24284625//24981863 chr3:29322846-29322847(+) m6A 5'UTR//exon       24284625//24981863//22608085 chr3:29322862-29322863(+) m6A 5'UTR//exon       24284625//24981863//22608085 chr3:29322885-29322886(+) m6A 5'UTR//exon       24284625//24981863//22608085 chr3:29323036-29323037(+) m6A 5'UTR//intron       - chr3:29323241-29323242(+) m6A CDS//exon       24981863 chr3:30045937-30045938(+) m6A 3'UTR       24981863 chr3:30045996-30045997(+) m6A 3'UTR       24981863 chr3:30046023-30046024(+) m6A 3'UTR       24981863 chr3:30046078-30046079(+) m6A 3'UTR       24981863 chr3:30046113-30046114(+) m6A 3'UTR       24981863 chr3:30046124-30046125(+) m6A 3'UTR       24981863 chr3:30046167-30046168(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	RBMS3	Cytosol HeLa-S3 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART3-5p
Interactor2: RBMS3

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg