Basic Information:

  VIRBase ID:  

VHID00299015

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.6055

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART1-3p:  MIMAT0003390          FAM136A:  NM_001329752     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART1-3p	FAM136A
miRBase Accession/Entrez ID	MIMAT0003390	84908
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	FAM136A	chr2:70525321(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	FAM136A	chr2:70523483-70523484(-) m6A 3'UTR//exon       24981863 chr2:70523499-70523500(-) m6A 3'UTR//exon       24981863 chr2:70523565-70523566(-) m6A 3'UTR//exon       24981863//22608085 chr2:70523640-70523641(-) m6A 3'UTR//exon       24284625//24981863//22608085 chr2:70523724-70523725(-) m6A 3'UTR//exon       24981863//22608085 chr2:70523735-70523736(-) m6A 3'UTR//exon       24981863//22608085 chr2:70524104-70524105(-) m6A 3'UTR//exon       24284625//27773535 chr2:70524276-70524277(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085 chr2:70524514-70524515(-) m6A 3'UTR//CDS//exon       24981863//27773535//22608085 chr2:70527651-70527652(-) m6A exon//intron       24981863 chr2:70528074-70528075(-) m6A 3'UTR//CDS//exon       27773536//22575960 chr2:70528147-70528148(-) m6A exon//intron       25456834//27773536 chr2:70528372-70528373(-) m6A exon//intron       - chr2:70528400-70528401(-) m6A exon//intron       - chr2:70528445-70528446(-) m6A exon//intron       - chr2:70528676-70528677(-) m6A CDS//exon//intron       27371828//27773536 chr2:70528691-70528692(-) m6A CDS//exon//intron       27371828//27773536 chr2:70528950-70528951(-) m6A CDS//intron       27773536 chr2:70529030-70529031(-) m6A CDS//intron       25456834//27773536 chr2:70529036-70529037(-) m6A CDS//intron       25456834//27773536 chr2:70529072-70529073(-) m6A CDS//exon       24209618//25456834//24981863//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	FAM136A	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleoplasm K562 cells     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART1-3p
Interactor2: FAM136A

Evidence Support:

Weak-Evidence	PAR-CLIP
Prediction-Evidence	cRep//miRanda//PARalyzer//PITA//Targetscan
Support Database	RepTar//ViRBase//VmiReg

References:

PMID	22100165	Target region	3'UTR
Source	RepTar//ViRBase//VmiReg	Interactor1 expression	None
Tissue or cell line	BC-1 cells	Interactor2 expression	None
Description	Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites.Clusters with seed matches to expressed miRNAs were considered candidate target sites. Of the clusters mapping to human 3'UTRs, 69% (BC-1) and 70% (BC-3) had seed matches to expressed miRNAs (Tables S6).Table S6A BC-1 derived 3'UTR clusters with seed matches to expressed miRNAs.