Detail Information

Basic Information:


  VIRBase ID:  

VHID00298866

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART1-3p:           VCPKMT:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART1-3p VCPKMT
miRBase
Accession/Entrez ID		 MIMAT0003390 79609
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - C14orf138//METTL21D//VCP-KMT

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR VCPKMT
chr14:50576827(-) A-I      intronic
chr14:50576806(-) A-I      intronic
chr14:50581472(-) A-I      intronic
chr14:50579021(-) A-I      intronic
chr14:50576837(-) A-I      intronic
chr14:50576797(-) A-I      intronic
chr14:50578509(-) A-I      intronic
chr14:50576771(-) A-I      intronic
chr14:50581530(-) A-I      intronic
chr14:50576921(-) A-I      intronic
chr14:50576957(-) A-I      intronic
chr14:50581458(-) A-I      intronic
chr14:50578339(-) A-I      intronic
chr14:50578404(-) A-I      intronic
chr14:50581480(-) A-I      intronic
chr14:50578571(-) A-I      intronic
chr14:50579034(-) A-I      intronic
chr14:50579538(-) A-I      intronic
chr14:50579594(-) A-I      intronic
chr14:50578561(-) A-I      intronic
chr14:50579617(-) A-I      intronic
chr14:50579630(-) A-I      intronic
chr14:50580552(-) A-I      intronic
chr14:50581511(-) A-I      intronic
chr14:50581546(-) A-I      intronic
chr14:50581977(-) A-I      intronic
chr14:50581982(-) A-I      intronic
chr14:50581992(-) A-I      intronic
chr14:50581568(-) A-I      intronic
chr14:50576902(-) A-I      intronic
chr14:50580620(-) A-I      intronic
chr14:50579799(-) A-I      intronic
chr14:50581444(-) A-I      intronic
chr14:50581297(-) A-I      intronic
chr14:50581336(-) A-I      intronic
chr14:50580632(-) A-I      intronic
chr14:50581468(-) A-I      intronic
chr14:50576800(-) A-I      intronic
chr14:50581484(-) A-I      intronic
chr14:50580565(-) A-I      intronic
chr14:50581324(-) A-I      intronic
chr14:50579603(-) A-I      intronic
chr14:50579643(-) A-I      intronic
chr14:50582102(-) A-I      intronic
chr14:50582035(-) A-I      intronic
chr14:50579688(-) A-I      intronic
chr14:50581899(-) A-I      intronic
chr14:50581967(-) A-I      intronic
chr14:50579776(-) A-I      intronic
chr14:50579012(-) A-I      intronic
chr14:50581516(-) A-I      intronic
chr14:50579777(-) A-I      intronic
chr14:50578413(-) A-I      intronic
chr14:50581456(-) A-I      intronic
chr14:50581420(-) A-I      intronic
chr14:50579634(-) A-I      intronic
chr14:50579814(-) A-I      intronic
chr14:50579685(-) A-I      intronic
chr14:50579020(-) A-I      intronic
chr14:50581499(-) A-I      intronic
chr14:50578456(-) A-I      intronic
chr14:50582008(-) A-I      intronic
chr14:50576849(-) A-I      intronic
chr14:50579007(-) A-I      intronic
chr14:50581535(-) A-I      intronic
chr14:50580572(-) A-I      intronic
chr14:50581446(-) A-I      intronic
chr14:50576817(-) A-I      intronic
chr14:50581310(-) A-I      intronic
chr14:50579699(-) A-I      intronic
chr14:50576783(-) A-I      intronic
chr14:50576882(-) A-I      intronic
chr14:50581459(-) A-I      intronic
chr14:50581300(-) A-I      intronic
chr14:50581485(-) A-I      intronic
chr14:50581433(-) A-I      intronic
chr14:50579602(-) A-I      intronic
chr14:50579679(-) A-I      intronic
chr14:50581481(-) A-I      intronic
chr14:50579019(-) A-I      intronic
chr14:50576903(-) A-I      intronic
chr14:50579746(-) A-I      intronic
chr14:50576707(-) A-I      intronic
chr14:50579001(-) A-I      intronic
chr14:50582045(-) A-I      intronic
chr14:50580590(-) A-I      intronic
chr14:50576758(-) A-I      intronic
chr14:50576729(-) A-I      intronic
chr14:50579675(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase VCPKMT
chr14:50575354-50575355(-) m6A 3'UTR//exon       27773535
chr14:50575368-50575369(-) m6A 3'UTR//exon       27773535
chr14:50575464-50575465(-) m6A 3'UTR//exon       27773535
chr14:50576008-50576009(-) m6A 3'UTR//exon       24981863//26404942
chr14:50576044-50576045(-) m6A 3'UTR//exon       24981863//26404942
chr14:50576082-50576083(-) m6A 3'UTR//exon       24981863//26404942
chr14:50576104-50576105(-) m6A 3'UTR//exon       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate VCPKMT
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART1-3p
Interactor2: VCPKMT

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

Starting a new search, please wait ...