Detail Information

Basic Information:


  VIRBase ID:  

VHID00297788

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART1-3p:           GNA12:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART1-3p GNA12
miRBase
Accession/Entrez ID		 MIMAT0003390 2768
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - gep//NNX3//RMP

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR GNA12
chr7:2798558(-) A-I      intronic
chr7:2796952(-) A-I      intronic
chr7:2796949(-) A-I      intronic
chr7:2796933(-) A-I      intronic
chr7:2796846(-) A-I      intronic
chr7:2796698(-) A-I      intronic
chr7:2796664(-) A-I      intronic
chr7:2796646(-) A-I      intronic
chr7:2796613(-) A-I      intronic
chr7:2796596(-) A-I      intronic
chr7:2796580(-) A-I      intronic
chr7:2796568(-) A-I      intronic
chr7:2796553(-) A-I      intronic
chr7:2796137(-) A-I      intronic
chr7:2796081(-) A-I      intronic
chr7:2796074(-) A-I      intronic
chr7:2796067(-) A-I      intronic
chr7:2792952(-) A-I      intronic
chr7:2879172(-) A-I      intronic
chr7:2879188(-) A-I      intronic
chr7:2879260(-) A-I      intronic
chr7:2879264(-) A-I      intronic
chr7:2879268(-) A-I      intronic
chr7:2879495(-) A-I      intronic
chr7:2879501(-) A-I      intronic
chr7:2879511(-) A-I      intronic
chr7:2880375(-) A-I      intronic
chr7:2880455(-) A-I      intronic
chr7:2882097(-) A-I      intronic
chr7:2882156(-) A-I      intronic
chr7:2882159(-) A-I      intronic
chr7:2882736(-) A-I      intronic
chr7:2883157(-) A-I      intronic
chr7:2883205(-) A-I      intronic
chr7:2883219(-) A-I      intronic
chr7:2858335(-) A-I      intronic
chr7:2858334(-) A-I      intronic
chr7:2858311(-) A-I      intronic
chr7:2858297(-) A-I      intronic
chr7:2858285(-) A-I      intronic
chr7:2858275(-) A-I      intronic
chr7:2792981(-) A-I      intronic
chr7:2792980(-) A-I      intronic
chr7:2792958(-) A-I      intronic
chr7:2792936(-) A-I      intronic
chr7:2792916(-) A-I      intronic
chr7:2781852(-) A-I      intronic
chr7:2781834(-) A-I      intronic
chr7:2781833(-) A-I      intronic
chr7:2781832(-) A-I      intronic
chr7:2781831(-) A-I      intronic
chr7:2781823(-) A-I      intronic
chr7:2781794(-) A-I      intronic
chr7:2781793(-) A-I      intronic
chr7:2781784(-) A-I      intronic
chr7:2792928(-) A-I      intronic
chr7:2792926(-) A-I      intronic
chr7:2780511(-) A-I      intronic
chr7:2794166(-) A-I      intronic
chr7:2794331(-) A-I      intronic
chr7:2810133(-) A-I      intronic
chr7:2813026(-) A-I      intronic
chr7:2852219(-) A-I      intronic
chr7:2882187(-) A-I      intronic
chr7:2883229(-) A-I      intronic
chr7:2879048(-) A-I      intronic
chr7:2781922(-) A-I      intronic
chr7:2781767(-) A-I      intronic
chr7:2780632(-) A-I      intronic
chr7:2780616(-) A-I      intronic
chr7:2780531(-) A-I      intronic
chr7:2780520(-) A-I      intronic
chr7:2780514(-) A-I      intronic
chr7:2780475(-) A-I      intronic
chr7:2780435(-) A-I      intronic
chr7:2780434(-) A-I      intronic
chr7:2777877(-) A-I      intronic
chr7:2777869(-) A-I      intronic
chr7:2777866(-) A-I      intronic
chr7:2777857(-) A-I      intronic
chr7:2777845(-) A-I      intronic
chr7:2777136(-) A-I      intronic
chr7:2777117(-) A-I      intronic
chr7:2777116(-) A-I      intronic
chr7:2868445(-) A-I      intronic
chr7:2865880(-) A-I      intronic
chr7:2865873(-) A-I      intronic
chr7:2865808(-) A-I      intronic
chr7:2862443(-) A-I      intronic
chr7:2858152(-) A-I      intronic
chr7:2858140(-) A-I      intronic
chr7:2858134(-) A-I      intronic
chr7:2856918(-) A-I      intronic
chr7:2852754(-) A-I      intronic
chr7:2852707(-) A-I      intronic
chr7:2828658(-) A-I      intronic
chr7:2828656(-) A-I      intronic
chr7:2828637(-) A-I      intronic
chr7:2827705(-) A-I      intronic
chr7:2827571(-) A-I      intronic
chr7:2819505(-) A-I      intronic
chr7:2819467(-) A-I      intronic
chr7:2819335(-) A-I      intronic
chr7:2819300(-) A-I      intronic
chr7:2819293(-) A-I      intronic
chr7:2818872(-) A-I      intronic
chr7:2818801(-) A-I      intronic
chr7:2818790(-) A-I      intronic
chr7:2818789(-) A-I      intronic
chr7:2818788(-) A-I      intronic
chr7:2818684(-) A-I      intronic
chr7:2813096(-) A-I      intronic
chr7:2812072(-) A-I      intronic
chr7:2812070(-) A-I      intronic
chr7:2811939(-) A-I      intronic
chr7:2811937(-) A-I      intronic
chr7:2810917(-) A-I      intronic
chr7:2810862(-) A-I      intronic
chr7:2810849(-) A-I      intronic
chr7:2810842(-) A-I      intronic
chr7:2810806(-) A-I      intronic
chr7:2810714(-) A-I      intronic
chr7:2810707(-) A-I      intronic
chr7:2810690(-) A-I      intronic
chr7:2809255(-) A-I      intronic
chr7:2809121(-) A-I      intronic
chr7:2809102(-) A-I      intronic
chr7:2808819(-) A-I      intronic
chr7:2808754(-) A-I      intronic
chr7:2808720(-) A-I      intronic
chr7:2808705(-) A-I      intronic
chr7:2808662(-) A-I      intronic
chr7:2808646(-) A-I      intronic
chr7:2798589(-) A-I      intronic
chr7:2768422(-) A-I      3'UTR
chr7:2768382(-) A-I      3'UTR
chr7:2768423(-) A-I      3'UTR
chr7:2768448(-) A-I      3'UTR
chr7:2768383(-) A-I      3'UTR
chr7:2768446(-) A-I      3'UTR
chr7:2768396(-) A-I      3'UTR
chr7:2768397(-) A-I      3'UTR
chr7:2768401(-) A-I      3'UTR
chr7:2768447(-) A-I      3'UTR
chr7:2768388(-) A-I      3'UTR
chr7:2882110(-) A-I      intronic
chr7:2879166(-) A-I      intronic
chr7:2819370(-) A-I      intronic
chr7:2808630(-) A-I      intronic
chr7:2819092(-) A-I      intronic
chr7:2818742(-) A-I      intronic
chr7:2828634(-) A-I      intronic
chr7:2830023(-) A-I      intronic
chr7:2819410(-) A-I      intronic
chr7:2808682(-) A-I      intronic
chr7:2809108(-) A-I      intronic
chr7:2868460(-) A-I      intronic
chr7:2819365(-) A-I      intronic
chr7:2870573(-) A-I      intronic
chr7:2856933(-) A-I      intronic
chr7:2819357(-) A-I      intronic
chr7:2819028(-) A-I      intronic
chr7:2830484(-) A-I      intronic
chr7:2879498(-) A-I      intronic
chr7:2879236(-) A-I      intronic
chr7:2818955(-) A-I      intronic
chr7:2882227(-) A-I      intronic
chr7:2883113(-) A-I      intronic
chr7:2819409(-) A-I      intronic
chr7:2808811(-) A-I      intronic
chr7:2812986(-) A-I      intronic
chr7:2809160(-) A-I      intronic
chr7:2883159(-) A-I      intronic
chr7:2852729(-) A-I      intronic
chr7:2796703(-) A-I      intronic
chr7:2825618(-) A-I      intronic
chr7:2883171(-) A-I      intronic
chr7:2796544(-) A-I      intronic
chr7:2809280(-) A-I      intronic
chr7:2819369(-) A-I      intronic
chr7:2879230(-) A-I      intronic
chr7:2780489(-) A-I      intronic
chr7:2882044(-) A-I      intronic
chr7:2823930(-) A-I      intronic
chr7:2818775(-) A-I      intronic
chr7:2812953(-) A-I      intronic
chr7:2779470(-) A-I      intronic
chr7:2808649(-) A-I      intronic
chr7:2883111(-) A-I      intronic
chr7:2879441(-) A-I      intronic
chr7:2796662(-) A-I      intronic
chr7:2780494(-) A-I      intronic
chr7:2809267(-) A-I      intronic
chr7:2823890(-) A-I      intronic
chr7:2825601(-) A-I      intronic
chr7:2809197(-) A-I      intronic
chr7:2828703(-) A-I      intronic
chr7:2828619(-) A-I      intronic
chr7:2808676(-) A-I      intronic
chr7:2879120(-) A-I      intronic
chr7:2810843(-) A-I      intronic
chr7:2823849(-) A-I      intronic
chr7:2808789(-) A-I      intronic
chr7:2880327(-) A-I      intronic
chr7:2825692(-) A-I      intronic
chr7:2856935(-) A-I      intronic
chr7:2819103(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED GNA12
chr7:2819092(-) A-G intron -    22484847
chr7:2819103(-) A-G intron -    22484847
chr7:2819315(-) A-G intron -    22484847
chr7:2819357(-) A-G intron -    22484847
chr7:2819365(-) A-G intron -    22484847
chr7:2819369(-) A-G intron -    22484847
chr7:2819370(-) A-G intron -    22484847
chr7:2819380(-) A-G intron -    22484847
chr7:2825601(-) A-G intron -    22484847
chr7:2825618(-) A-G intron -    22484847
chr7:2833515(-) G-T intron -    22484847
chr7:2879120(-) A-G intron -    22484847
chr7:2879230(-) A-G intron -    22484847
chr7:2879236(-) A-G intron -    22484847
chr7:2879441(-) A-G intron -    22484847
chr7:2879498(-) A-G intron -    22484847
chr7:2880327(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase GNA12
chr7:2768327-2768328(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22608085
chr7:2768351-2768352(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//22608085
chr7:2768380-2768381(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr7:2768395-2768396(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr7:2768443-2768444(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr7:2768494-2768495(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr7:2768638-2768639(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22608085
chr7:2768669-2768670(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22608085
chr7:2768720-2768721(-) m6A 3'UTR//exon       24284625//24209618//27773535
chr7:2769026-2769027(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22608085
chr7:2769139-2769140(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr7:2769149-2769150(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr7:2769194-2769195(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085
chr7:2769248-2769249(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773536//22608085
chr7:2769602-2769603(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085
chr7:2769686-2769687(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr7:2769711-2769712(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085
chr7:2769847-2769848(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22608085
chr7:2769938-2769939(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr7:2769946-2769947(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr7:2770038-2770039(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr7:2770230-2770231(-) m6A 3'UTR//exon       24284625//27773535//22575960//22608085
chr7:2770312-2770313(-) m6A 3'UTR//exon       24284625//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr7:2770379-2770380(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr7:2770428-2770429(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr7:2770436-2770437(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr7:2770487-2770488(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr7:2770557-2770558(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr7:2770595-2770596(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr7:2770633-2770634(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr7:2770641-2770642(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr7:2770672-2770673(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr7:2770758-2770759(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr7:2770830-2770831(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr7:2770839-2770840(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr7:2770857-2770858(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr7:2770938-2770939(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr7:2771013-2771014(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr7:2771041-2771042(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr7:2771064-2771065(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22608085
chr7:2771125-2771126(-) m6A CDS//exon       24284625//25456834//24981863//27773535//27371828//27773536//22608085
chr7:2771136-2771137(-) m6A CDS//exon       24284625//25456834//24981863//27773535//27371828//27773536//22608085
chr7:2771169-2771170(-) m6A CDS//exon       24284625//27773535//27371828//27773536
chr7:2773100-2773101(-) m6A CDS//exon       24284625
chr7:2773109-2773110(-) m6A CDS//exon       24284625
chr7:2883776-2883777(-) m6A CDS       24209618

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate GNA12
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol K562 cells     -
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART1-3p
Interactor2: GNA12

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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