Basic Information:

  VIRBase ID:  

VHID00297190

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART2-5p:  MIMAT0001000          SGMS1:  NM_147156     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART2-5p	SGMS1
miRBase Accession/Entrez ID	MIMAT0001000	259230
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	hmob33//MOB//MOB1//SMS1//TMEM23

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SGMS1	chr10:52126406(-) A-I      intronic chr10:52126451(-) A-I      intronic chr10:52125429(-) A-I      intronic chr10:52125444(-) A-I      intronic chr10:52125445(-) A-I      intronic chr10:52125446(-) A-I      intronic chr10:52125456(-) A-I      intronic chr10:52125468(-) A-I      intronic chr10:52125617(-) A-I      intronic chr10:52125619(-) A-I      intronic chr10:52125622(-) A-I      intronic chr10:52126442(-) A-I      intronic chr10:52125423(-) A-I      intronic chr10:52125422(-) A-I      intronic chr10:52125410(-) A-I      intronic chr10:52125612(-) A-I      intronic chr10:52125401(-) A-I      intronic chr10:52126427(-) A-I      intronic chr10:52125626(-) A-I      intronic chr10:52125646(-) A-I      intronic chr10:52125652(-) A-I      intronic chr10:52125621(-) A-I      intronic chr10:52125641(-) A-I      intronic chr10:52125408(-) A-I      intronic chr10:52125628(-) A-I      intronic chr10:52125682(-) A-I      intronic chr10:52125270(-) A-I      intronic chr10:52125379(-) A-I      intronic chr10:52125404(-) A-I      intronic chr10:52125407(-) A-I      intronic chr10:52125399(-) A-I      intronic chr10:52166563(-) A-I      intronic chr10:52376133(-) A-I      intronic chr10:52279947(-) A-I      intronic chr10:52168553(-) A-I      intronic chr10:52168552(-) A-I      intronic chr10:52251099(-) A-I      intronic chr10:52166635(-) A-I      intronic chr10:52253650(-) A-I      intronic chr10:52166533(-) A-I      intronic chr10:52140770(-) A-I      intronic chr10:52380780(-) A-I      intronic chr10:52140668(-) A-I      intronic chr10:52140620(-) A-I      intronic chr10:52130457(-) A-I      intronic chr10:52253654(-) A-I      intronic chr10:52380723(-) A-I      intronic chr10:52129086(-) A-I      intronic chr10:52128273(-) A-I      intronic chr10:52166765(-) A-I      intronic chr10:52253669(-) A-I      intronic chr10:52280903(-) A-I      intronic chr10:52253737(-) A-I      intronic chr10:52128389(-) A-I      intronic chr10:52288416(-) A-I      intronic chr10:52118449(-) A-I      intronic chr10:52118373(-) A-I      intronic chr10:52253747(-) A-I      intronic chr10:52280916(-) A-I      intronic chr10:52128281(-) A-I      intronic chr10:52144483(-) A-I      intronic chr10:52296075(-) A-I      intronic chr10:52257442(-) A-I      intronic chr10:52251077(-) A-I      intronic chr10:52118240(-) A-I      intronic chr10:52174078(-) A-I      intronic chr10:52380931(-) A-I      intronic chr10:52380860(-) A-I      intronic chr10:52253636(-) A-I      intronic chr10:52257470(-) A-I      intronic chr10:52375916(-) A-I      intronic chr10:52117822(-) A-I      intronic chr10:52117796(-) A-I      intronic chr10:52090217(-) A-I      intronic chr10:52377682(-) A-I      intronic chr10:52376168(-) A-I      intronic chr10:52128284(-) A-I      intronic chr10:52118349(-) A-I      intronic chr10:52376162(-) A-I      intronic chr10:52160335(-) A-I      intronic chr10:52376041(-) A-I      intronic chr10:52355074(-) A-I      intronic chr10:52355057(-) A-I      intronic chr10:52247834(-) A-I      intronic chr10:52355008(-) A-I      intronic chr10:52347210(-) A-I      intronic chr10:52347208(-) A-I      intronic chr10:52344257(-) A-I      intronic chr10:52293775(-) A-I      intronic chr10:52257406(-) A-I      intronic chr10:52344215(-) A-I      intronic chr10:52344196(-) A-I      intronic chr10:52335301(-) A-I      intronic chr10:52335302(-) A-I      intronic chr10:52335163(-) A-I      intronic chr10:52295984(-) A-I      intronic chr10:52295976(-) A-I      intronic chr10:52295948(-) A-I      intronic chr10:52295356(-) A-I      intronic chr10:52295334(-) A-I      intronic chr10:52295333(-) A-I      intronic chr10:52295307(-) A-I      intronic chr10:52295306(-) A-I      intronic chr10:52295264(-) A-I      intronic chr10:52295263(-) A-I      intronic chr10:52295237(-) A-I      intronic chr10:52294916(-) A-I      intronic chr10:52294811(-) A-I      intronic chr10:52221953(-) A-I      intronic chr10:52293698(-) A-I      intronic chr10:52288429(-) A-I      intronic chr10:52166675(-) A-I      intronic chr10:52380923(-) A-I      intronic chr10:52349095(-) A-I      intronic chr10:52253829(-) A-I      intronic chr10:52253695(-) A-I      intronic chr10:52366747(-) A-I      intronic chr10:52377605(-) A-I      intronic chr10:52257478(-) A-I      intronic chr10:52380778(-) A-I      intronic chr10:52104440(-) A-I      intronic chr10:52140125(-) A-I      intronic chr10:52200467(-) A-I      intronic chr10:52207925(-) A-I      intronic chr10:52219328(-) A-I      intronic chr10:52221939(-) A-I      intronic chr10:52221965(-) A-I      intronic chr10:52247859(-) A-I      intronic chr10:52247896(-) A-I      intronic chr10:52247997(-) A-I      intronic chr10:52251053(-) A-I      intronic chr10:52128214(-) A-I      intronic chr10:52377681(-) A-I      intronic chr10:52094996(-) A-I      intronic chr10:52187126(-) A-I      intronic chr10:52377728(-) A-I      intronic chr10:52254967(-) A-I      intronic chr10:52377482(-) A-I      intronic chr10:52347321(-) A-I      intronic chr10:52294977(-) A-I      intronic chr10:52140106(-) A-I      intronic chr10:52254889(-) A-I      intronic chr10:52166758(-) A-I      intronic chr10:52377710(-) A-I      intronic chr10:52168146(-) A-I      intronic chr10:52250998(-) A-I      intronic chr10:52168554(-) A-I      intronic chr10:52380854(-) A-I      intronic chr10:52140884(-) A-I      intronic chr10:52253736(-) A-I      intronic chr10:52129182(-) A-I      intronic chr10:52295998(-) A-I      intronic chr10:52295338(-) A-I      intronic chr10:52380714(-) A-I      intronic chr10:52160302(-) A-I      intronic chr10:52140681(-) A-I      intronic chr10:52372657(-) A-I      intronic chr10:52159713(-) A-I      intronic chr10:52376182(-) A-I      intronic chr10:52140839(-) A-I      intronic chr10:52380726(-) A-I      intronic chr10:52377705(-) A-I      intronic chr10:52200602(-) A-I      intronic chr10:52168171(-) A-I      intronic chr10:52247912(-) A-I      intronic chr10:52376025(-) A-I      intronic chr10:52247841(-) A-I      intronic chr10:52251075(-) A-I      intronic chr10:52380687(-) A-I      intronic chr10:52349191(-) A-I      intronic chr10:52280662(-) A-I      intronic chr10:52159775(-) A-I      intronic chr10:52372639(-) A-I      intronic chr10:52295246(-) A-I      intronic chr10:52280010(-) A-I      intronic chr10:52335272(-) A-I      intronic chr10:52348592(-) A-I      intronic chr10:52159756(-) A-I      intronic chr10:52280872(-) A-I      intronic chr10:52380741(-) A-I      intronic chr10:52305257(-) A-I      intronic chr10:52348764(-) A-I      intronic chr10:52295993(-) A-I      intronic chr10:52293748(-) A-I      intronic chr10:52140837(-) A-I      intronic chr10:52347327(-) A-I      intronic chr10:52380699(-) A-I      intronic chr10:52354993(-) A-I      intronic chr10:52139975(-) A-I      intronic chr10:52148340(-) A-I      intronic chr10:52253686(-) A-I      intronic chr10:52128190(-) A-I      intronic chr10:52380893(-) A-I      intronic chr10:52349265(-) A-I      intronic chr10:52293765(-) A-I      intronic chr10:52118448(-) A-I      intronic chr10:52130465(-) A-I      intronic chr10:52166603(-) A-I      intronic chr10:52348575(-) A-I      intronic chr10:52377582(-) A-I      intronic chr10:52092563(-) A-I      intronic chr10:52294857(-) A-I      intronic chr10:52128208(-) A-I      intronic chr10:52247873(-) A-I      intronic chr10:52271283(-) A-I      intronic chr10:52125274(-) A-I      intronic chr10:52125486(-) A-I      intronic chr10:52125683(-) A-I      intronic chr10:52271492(-) A-I      intronic chr10:52160332(-) A-I      intronic chr10:52125342(-) A-I      intronic chr10:52144434(-) A-I      intronic chr10:52074597(-) A-I      intronic chr10:52295902(-) A-I      intronic chr10:52265784(-) A-I      intronic chr10:52335702(-) A-I      intronic chr10:52160349(-) A-I      intronic chr10:52168660(-) A-I      intronic chr10:52125469(-) A-I      intronic chr10:52125473(-) A-I      intronic chr10:52082264(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SGMS1	chr10:52125274(-) A-G intron -    22484847 chr10:52125342(-) A-G intron -    22484847 chr10:52125469(-) A-G intron -    22484847 chr10:52125473(-) A-G intron -    22484847 chr10:52125486(-) A-G intron -    22484847 chr10:52125683(-) A-G intron -    22484847 chr10:52166563(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SGMS1	chr10:52066529-52066530(-) m6A 3'UTR       27773535 chr10:52066720-52066721(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22575960//22608085 chr10:52066731-52066732(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22575960//22608085 chr10:52066825-52066826(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22575960//22608085 chr10:52066854-52066855(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22575960//22608085 chr10:52066877-52066878(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22575960//22608085 chr10:52067055-52067056(-) m6A 3'UTR//CDS       24284625//24981863//22608085 chr10:52067777-52067778(-) m6A 3'UTR//CDS       24981863 chr10:52100149-52100150(-) m6A 3'UTR//5'UTR//intron       24981863 chr10:52100162-52100163(-) m6A 3'UTR//5'UTR//intron       24981863 chr10:52100217-52100218(-) m6A 3'UTR//5'UTR//intron       24981863 chr10:52102664-52102665(-) m6A 3'UTR//intron       - chr10:52102703-52102704(-) m6A 3'UTR//intron       - chr10:52103198-52103199(-) m6A 3'UTR//intron       24981863//27773535 chr10:52103286-52103287(-) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr10:52103362-52103363(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//22575960//22608085 chr10:52103471-52103472(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr10:52103508-52103509(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr10:52103565-52103566(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr10:52103605-52103606(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr10:52103678-52103679(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr10:52103689-52103690(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr10:52103736-52103737(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr10:52103770-52103771(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr10:52103833-52103834(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr10:52103896-52103897(-) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr10:52103931-52103932(-) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr10:52103952-52103953(-) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr10:52104000-52104001(-) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr10:52104022-52104023(-) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr10:52104045-52104046(-) m6A 5'UTR//exon       24284625//24209618//24981863//27773535//22608085 chr10:52104052-52104053(-) m6A 5'UTR//exon       24284625//24209618//24981863//27773535//22608085 chr10:52177825-52177826(-) m6A exon//intron       24284625//24981863//27773535 chr10:52177847-52177848(-) m6A exon//intron       24284625//24981863//27773535 chr10:52177859-52177860(-) m6A exon//intron       24284625//24981863//27773535 chr10:52177875-52177876(-) m6A exon//intron       27773535 chr10:52178000-52178001(-) m6A exon//intron       27773536 chr10:52178009-52178010(-) m6A exon//intron       27773536 chr10:52178193-52178194(-) m6A exon//intron       24981863 chr10:52279619-52279620(-) m6A 5'UTR//exon       27773535 chr10:52279633-52279634(-) m6A 5'UTR//exon       27773535 chr10:52279651-52279652(-) m6A 5'UTR//exon       27773535 chr10:52349929-52349930(-) m6A 5'UTR//exon       27773535 chr10:52383620-52383621(-) m6A 5'UTR//intron       24284625//24981863//27371828//27773536 chr10:52383731-52383732(-) m6A 5'UTR//intron       24981863//27773536 chr10:52384689-52384690(-) m6A exon//intron       24981863//27773536 chr10:52384863-52384864(-) m6A exon       24284625//25456834 chr10:52384898-52384899(-) m6A exon       24284625//25456834

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SGMS1	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)|K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Insoluble cytoplasm K562 cells     - Membrane K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	ebv-miR-BART2-5p	Panobinostat       6918837 Irinotecan       60838 Topotecan       60700 Dovitinib       135398510

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART2-5p
Interactor2: SGMS1

Evidence Support:

Prediction-Evidence	cRep//miRanda//Targetscan
Support Database	RepTar//VmiReg