Basic Information:

  VIRBase ID:  

VHID00295649

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART2-5p:  MIMAT0001000          LRRN1:  NM_001324188     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART2-5p	LRRN1
miRBase Accession/Entrez ID	MIMAT0001000	57633
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	FIGLER3//NLRR-1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	LRRN1	chr3:3882768(+) A-I      intronic chr3:3882722(+) A-I      intronic chr3:3883332(+) A-I      intronic chr3:3883454(+) A-I      intronic chr3:3883392(+) A-I      intronic chr3:3883226(+) A-I      intronic chr3:3883283(+) A-I      intronic chr3:3883296(+) A-I      intronic chr3:3882932(+) A-I      intronic chr3:3883476(+) A-I      intronic chr3:3882957(+) A-I      intronic chr3:3883222(+) A-I      intronic chr3:3883352(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	LRRN1	chr3:3882932(+) A-I intron -    15342557 chr3:3882957(+) A-I intron -    15342557 chr3:3883221(+) A-I intron -    15342557 chr3:3883222(+) A-I intron -    15342557 chr3:3883226(+) A-I intron -    15342557 chr3:3883282(+) A-I intron -    15342557 chr3:3883283(+) A-I intron -    15342557 chr3:3883296(+) A-I intron -    15342557 chr3:3883302(+) A-I intron -    15342557 chr3:3883320(+) A-I intron -    15342557 chr3:3883332(+) A-I intron -    15342557 chr3:3883352(+) A-I intron -    15342557 chr3:3883392(+) A-I intron -    15342557 chr3:3883400(+) A-I intron -    15342557 chr3:3883454(+) A-I intron -    15342557 chr3:3883476(+) A-I intron -    15342557 chr3:3886580(+) A-I exon CDS    15342557

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	LRRN1	chr3:3841273-3841274(+) m6A 5'UTR       25456834 chr3:3842747-3842748(+) m6A exon//intron       25456834 chr3:3842788-3842789(+) m6A exon//intron       25456834 chr3:3842830-3842831(+) m6A exon//intron       24209618//25456834 chr3:3886059-3886060(+) m6A 5'UTR//exon       24209618//25456834//24981863 chr3:3886092-3886093(+) m6A 5'UTR//exon       24209618//25456834//24981863 chr3:3886119-3886120(+) m6A 5'UTR//exon       24209618//25456834//24981863 chr3:3886132-3886133(+) m6A 5'UTR//exon       24209618//25456834//24981863 chr3:3886160-3886161(+) m6A 5'UTR//exon       24209618//25456834//24981863 chr3:3886170-3886171(+) m6A 5'UTR//exon       24209618//25456834//24981863 chr3:3886183-3886184(+) m6A 5'UTR//exon       24209618//25456834//24981863 chr3:3886212-3886213(+) m6A 5'UTR//exon       24209618//25456834//24981863 chr3:3886284-3886285(+) m6A 5'UTR       24209618//25456834//24981863 chr3:3886583-3886584(+) m6A CDS       24209618//24981863 chr3:3886621-3886622(+) m6A CDS       24209618//25456834//24981863 chr3:3886638-3886639(+) m6A CDS       24209618//25456834//24981863 chr3:3886674-3886675(+) m6A CDS       24209618//25456834//24981863 chr3:3886746-3886747(+) m6A CDS       24209618//25456834//24981863 chr3:3886765-3886766(+) m6A CDS       24209618//24981863 chr3:3886848-3886849(+) m6A CDS       24209618//24981863 chr3:3886926-3886927(+) m6A CDS       24209618//24981863 chr3:3886953-3886954(+) m6A CDS       24209618//24981863 chr3:3886960-3886961(+) m6A CDS       24209618//24981863 chr3:3887074-3887075(+) m6A CDS       24209618//24981863 chr3:3887130-3887131(+) m6A CDS       24209618//24981863 chr3:3887142-3887143(+) m6A CDS       24209618//24981863 chr3:3887169-3887170(+) m6A CDS       24209618//24981863 chr3:3887197-3887198(+) m6A CDS       24209618//24981863 chr3:3887263-3887264(+) m6A CDS       24209618//25456834//24981863 chr3:3887296-3887297(+) m6A CDS       24209618//25456834//24981863 chr3:3887358-3887359(+) m6A CDS       24209618//25456834//24981863 chr3:3887390-3887391(+) m6A CDS       24209618//25456834//24981863 chr3:3887483-3887484(+) m6A CDS       24209618//25456834//24981863 chr3:3887584-3887585(+) m6A CDS       24209618//25456834//24981863 chr3:3887661-3887662(+) m6A CDS       24209618//25456834//24981863 chr3:3887686-3887687(+) m6A CDS       24209618//25456834//24981863 chr3:3887735-3887736(+) m6A CDS       24209618//25456834//24981863 chr3:3887802-3887803(+) m6A CDS       24209618//24981863 chr3:3887847-3887848(+) m6A CDS       24209618//24981863 chr3:3887879-3887880(+) m6A CDS       24209618//24981863 chr3:3887924-3887925(+) m6A CDS       24209618//24981863 chr3:3887982-3887983(+) m6A CDS       24209618//24981863 chr3:3888137-3888138(+) m6A CDS       24209618//24981863 chr3:3888189-3888190(+) m6A CDS       24209618//24981863 chr3:3888206-3888207(+) m6A CDS       24209618//24981863 chr3:3888303-3888304(+) m6A CDS       24209618//24981863 chr3:3888338-3888339(+) m6A CDS       24209618//25456834//24981863 chr3:3888408-3888409(+) m6A CDS       24209618//25456834//24981863 chr3:3888426-3888427(+) m6A CDS       24209618//25456834//24981863 chr3:3888544-3888545(+) m6A 3'UTR       24209618//25456834//24981863 chr3:3888555-3888556(+) m6A 3'UTR       24209618//25456834//24981863 chr3:3888914-3888915(+) m6A 3'UTR       24209618//25456834//24981863 chr3:3888939-3888940(+) m6A 3'UTR       24209618//25456834//24981863 chr3:3888966-3888967(+) m6A 3'UTR       24209618//25456834//24981863 chr3:3889043-3889044(+) m6A 3'UTR       25456834//24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	LRRN1	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleus HCC cell line (HepG2)     -

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	ebv-miR-BART2-5p	Panobinostat       6918837 Irinotecan       60838 Topotecan       60700 Dovitinib       135398510

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART2-5p
Interactor2: LRRN1

Evidence Support:

Prediction-Evidence	cRep//miRanda
Support Database	RepTar//VmiReg