Detail Information

Basic Information:


  VIRBase ID:  

VHID00294773

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART2-5p:           VPS41:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART2-5p VPS41
miRBase
Accession/Entrez ID		 MIMAT0001000 27072
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - HVPS41//hVps41p//HVSP41

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR VPS41
chr7:38807366(-) A-I      intronic
chr7:38854061(-) A-I      intronic
chr7:38807315(-) A-I      intronic
chr7:38774589(-) A-I      intronic
chr7:38774608(-) A-I      intronic
chr7:38807301(-) A-I      intronic
chr7:38807304(-) A-I      intronic
chr7:38883109(-) A-I      intronic
chr7:38941414(-) A-I      intronic
chr7:38807370(-) A-I      intronic
chr7:38807308(-) A-I      intronic
chr7:38807310(-) A-I      intronic
chr7:38941430(-) A-I      intronic
chr7:38807319(-) A-I      intronic
chr7:38854163(-) A-I      intronic
chr7:38807321(-) A-I      intronic
chr7:38807326(-) A-I      intronic
chr7:38807357(-) A-I      intronic
chr7:38856375(-) A-I      intronic
chr7:38856492(-) A-I      intronic
chr7:38857136(-) A-I      intronic
chr7:38807327(-) A-I      intronic
chr7:38807336(-) A-I      intronic
chr7:38807337(-) A-I      intronic
chr7:38883088(-) A-I      intronic
chr7:38883093(-) A-I      intronic
chr7:38807339(-) A-I      intronic
chr7:38807344(-) A-I      intronic
chr7:38807350(-) A-I      intronic
chr7:38807364(-) A-I      intronic
chr7:38807358(-) A-I      intronic
chr7:38773462(-) A-I      intronic
chr7:38764369(-) A-I      3'UTR
chr7:38764220(-) A-I      3'UTR
chr7:38763286(-) A-I      3'UTR
chr7:38764424(-) A-I      3'UTR
chr7:38764277(-) A-I      3'UTR
chr7:38764261(-) A-I      3'UTR
chr7:38763119(-) A-I      3'UTR
chr7:38764223(-) A-I      3'UTR
chr7:38763154(-) A-I      3'UTR
chr7:38764300(-) A-I      3'UTR
chr7:38764365(-) A-I      3'UTR
chr7:38764367(-) A-I      3'UTR
chr7:38764231(-) A-I      3'UTR
chr7:38764192(-) A-I      3'UTR
chr7:38764195(-) A-I      3'UTR
chr7:38763059(-) A-I      3'UTR
chr7:38764200(-) A-I      3'UTR
chr7:38764201(-) A-I      3'UTR
chr7:38764205(-) A-I      3'UTR
chr7:38764210(-) A-I      3'UTR
chr7:38763046(-) A-I      3'UTR
chr7:38764362(-) A-I      3'UTR
chr7:38764368(-) A-I      3'UTR
chr7:38763277(-) A-I      3'UTR
chr7:38764374(-) A-I      3'UTR
chr7:38764389(-) A-I      3'UTR
chr7:38764408(-) A-I      3'UTR
chr7:38763267(-) A-I      3'UTR
chr7:38764241(-) A-I      3'UTR
chr7:38763176(-) A-I      3'UTR
chr7:38764246(-) A-I      3'UTR
chr7:38856398(-) A-I      intronic
chr7:38856442(-) A-I      intronic
chr7:38772526(-) A-I      intronic
chr7:38772700(-) A-I      intronic
chr7:38856381(-) A-I      intronic
chr7:38946083(-) A-I      intronic
chr7:38763144(-) A-I      3'UTR
chr7:38764473(-) A-I      3'UTR
chr7:38764296(-) A-I      3'UTR
chr7:38764393(-) A-I      3'UTR
chr7:38764322(-) A-I      3'UTR
chr7:38764206(-) A-I      3'UTR
chr7:38764464(-) A-I      3'UTR
chr7:38764410(-) A-I      3'UTR
chr7:38764459(-) A-I      3'UTR
chr7:38764438(-) A-I      3'UTR
chr7:38763202(-) A-I      3'UTR
chr7:38763200(-) A-I      3'UTR
chr7:38763151(-) A-I      3'UTR
chr7:38764281(-) A-I      3'UTR
chr7:38764259(-) A-I      3'UTR
chr7:38764286(-) A-I      3'UTR
chr7:38763237(-) A-I      3'UTR
chr7:38763212(-) A-I      3'UTR
chr7:38764221(-) A-I      3'UTR
chr7:38763141(-) A-I      3'UTR
chr7:38763280(-) A-I      3'UTR
chr7:38764385(-) A-I      3'UTR
chr7:38764299(-) A-I      3'UTR
chr7:38764354(-) A-I      3'UTR
chr7:38763095(-) A-I      3'UTR
chr7:38763158(-) A-I      3'UTR
chr7:38764315(-) A-I      3'UTR
chr7:38764395(-) A-I      3'UTR
chr7:38764405(-) A-I      3'UTR
chr7:38764226(-) A-I      3'UTR
chr7:38764318(-) A-I      3'UTR
chr7:38763282(-) A-I      3'UTR
chr7:38763074(-) A-I      3'UTR
chr7:38763261(-) A-I      3'UTR
chr7:38764465(-) A-I      3'UTR
chr7:38764396(-) A-I      3'UTR
chr7:38763291(-) A-I      3'UTR
chr7:38764386(-) A-I      3'UTR
chr7:38763068(-) A-I      3'UTR
chr7:38764326(-) A-I      3'UTR
chr7:38764266(-) A-I      3'UTR
chr7:38763132(-) A-I      3'UTR
chr7:38763175(-) A-I      3'UTR
chr7:38764305(-) A-I      3'UTR
chr7:38772556(-) A-I      intronic
chr7:38773487(-) A-I      intronic
chr7:38856448(-) A-I      intronic
chr7:38772592(-) A-I      intronic
chr7:38773683(-) A-I      intronic
chr7:38773604(-) A-I      intronic
chr7:38789638(-) A-I      intronic
chr7:38773574(-) A-I      intronic
chr7:38772604(-) A-I      intronic
chr7:38856376(-) A-I      intronic
chr7:38856987(-) A-I      intronic
chr7:38856982(-) A-I      intronic
chr7:38772678(-) A-I      intronic
chr7:38856443(-) A-I      intronic
chr7:38772581(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED VPS41
chr7:38764259(-) A-I exon 3'UTR    15258596   //21960545
chr7:38764286(-) A-I exon 3'UTR    15342557   //21960545   //22327324
chr7:38764326(-) A-I exon 3'UTR    15258596
chr7:38764340(-) A-I exon 3'UTR    15342557
chr7:38764342(-) A-I exon 3'UTR    15342557
chr7:38764358(-) A-I exon 3'UTR    15342557   //15258596   //22327324
chr7:38764385(-) A-I exon 3'UTR    15258596
chr7:38764395(-) A-I exon 3'UTR    15258596   //22327324
chr7:38764405(-) A-I exon 3'UTR    15258596
chr7:38764438(-) A-I exon 3'UTR    15258596
chr7:38764459(-) A-I exon 3'UTR    15342557   //15258596   //16100382
chr7:38860861(-) A-I exon CDS    15342557
chr7:38764318(-) A-I exon 3'UTR    22327324
chr7:38764322(-) A-I exon 3'UTR    21960545   //22327324
chr7:38772526(-) A-I intron -    22327324
chr7:38774031(-) A-I intron -    22327324
chr7:38774182(-) A-I intron -    22327324
chr7:38764221(-) A-G exon 3'UTR    22484847
chr7:38764259(-) A-G exon 3'UTR    22484847
chr7:38764286(-) A-G exon 3'UTR    22484847
chr7:38764309(-) A-G exon 3'UTR    22484847
chr7:38764315(-) A-G exon 3'UTR    22484847
chr7:38764318(-) A-G exon 3'UTR    22484847
chr7:38764322(-) A-G exon 3'UTR    22484847
chr7:38764326(-) A-G exon 3'UTR    22484847
chr7:38764331(-) A-G exon 3'UTR    22484847
chr7:38764342(-) A-G exon 3'UTR    22484847
chr7:38764358(-) A-G exon 3'UTR    22484847
chr7:38764393(-) A-G exon 3'UTR    22484847
chr7:38764395(-) A-G exon 3'UTR    22484847
chr7:38764438(-) A-G exon 3'UTR    22484847
chr7:38764459(-) A-G exon 3'UTR    22484847
chr7:38772525(-) A-G intron -    22484847
chr7:38772526(-) A-G intron -    22484847
chr7:38773487(-) A-G intron -    22484847
chr7:38773603(-) A-G intron -    22484847
chr7:38856381(-) A-G intron -    22484847
chr7:38856442(-) A-G intron -    22484847
chr7:38856443(-) A-G intron -    22484847
chr7:38856448(-) A-G intron -    22484847
chr7:38856508(-) A-G intron -    22484847
chr7:38856987(-) A-G intron -    22484847
chr7:38861305(-) A-T intron -    22484847
chr7:38861306(-) G-T intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase VPS41
chr7:38762705-38762706(-) m6A 3'UTR       24981863//27773535
chr7:38762766-38762767(-) m6A 3'UTR       24284625//27773535//27371828
chr7:38762827-38762828(-) m6A 3'UTR       24284625//27773535//27371828
chr7:38762842-38762843(-) m6A 3'UTR       24284625//27773535
chr7:38763386-38763387(-) m6A 3'UTR       27773535
chr7:38763412-38763413(-) m6A 3'UTR       27773535
chr7:38764601-38764602(-) m6A 3'UTR       27773535
chr7:38764713-38764714(-) m6A 3'UTR       24284625
chr7:38764752-38764753(-) m6A 3'UTR       24284625//27773535
chr7:38764795-38764796(-) m6A 3'UTR       24284625//27773535
chr7:38764878-38764879(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr7:38764909-38764910(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr7:38764960-38764961(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr7:38764982-38764983(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr7:38765008-38765009(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr7:38765024-38765025(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr7:38765126-38765127(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085
chr7:38765146-38765147(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr7:38765197-38765198(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr7:38765331-38765332(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr7:38765510-38765511(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22608085
chr7:38765530-38765531(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22608085
chr7:38765541-38765542(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22608085
chr7:38765575-38765576(-) m6A 3'UTR       24209618
chr7:38765885-38765886(-) m6A 3'UTR//CDS//exon       24284625
chr7:38781699-38781700(-) m6A CDS//exon       26404942
chr7:38783005-38783006(-) m6A CDS//exon       26404942
chr7:38791800-38791801(-) m6A CDS       26404942//27773535
chr7:38791821-38791822(-) m6A CDS       26404942//27773535
chr7:38791856-38791857(-) m6A CDS       26404942//27773535
chr7:38791887-38791888(-) m6A CDS       26404942//27773535
chr7:38794323-38794324(-) m6A CDS       27773535
chr7:38794513-38794514(-) m6A CDS       27773535
chr7:38807154-38807155(-) m6A CDS       24981863//27773535
chr7:38810809-38810810(-) m6A CDS       24981863//27773535
chr7:38812167-38812168(-) m6A CDS       24981863//27773535
chr7:38836117-38836118(-) m6A CDS//intron       27773535
chr7:38836396-38836397(-) m6A CDS//intron       27773535
chr7:38836435-38836436(-) m6A CDS//intron       27773535
chr7:38836534-38836535(-) m6A exon//intron       27773535
chr7:38908832-38908833(-) m6A 5'UTR//CDS       24981863
chr7:38908848-38908849(-) m1A 5'UTR//CDS       26863196
chr7:38937725-38937726(-) m6A 5'UTR//CDS//intron       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate VPS41
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)     -
Membrane HCC cell line (HepG2)     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Ribosome Colon cancer cells     24393600

Related Drug Information:


Resource Symbol Drug Name PubChem ID
RNAactDrug ebv-miR-BART2-5p
Panobinostat       6918837
Irinotecan       60838
Topotecan       60700
Dovitinib       135398510

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART2-5p
Interactor2: VPS41

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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