Detail Information

Basic Information:


  VIRBase ID:  

VHID00293824

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART2-5p:           ZNF235:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART2-5p ZNF235
miRBase
Accession/Entrez ID		 MIMAT0001000 9310
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - ANF270//HZF6//ZFP93//ZNF270

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ZNF235
chr19:44793240(-) A-I      Syn:Leu->Leu
chr19:44793216(-) A-I      NonSyn:Ile->Met
chr19:44793215(-) A-I      NonSyn:Asn->Asp
chr19:44793030(-) A-I      NonSyn:Ile->Met
chr19:44802050(-) A-I      intronic
chr19:44802160(-) A-I      intronic
chr19:44802042(-) A-I      intronic
chr19:44802027(-) A-I      intronic
chr19:44794764(-) A-I      intronic
chr19:44801650(-) A-I      intronic
chr19:44801702(-) A-I      intronic
chr19:44801714(-) A-I      intronic
chr19:44801749(-) A-I      intronic
chr19:44801754(-) A-I      intronic
chr19:44801781(-) A-I      intronic
chr19:44801786(-) A-I      intronic
chr19:44801789(-) A-I      intronic
chr19:44801791(-) A-I      intronic
chr19:44801795(-) A-I      intronic
chr19:44801883(-) A-I      intronic
chr19:44802005(-) A-I      intronic
chr19:44802026(-) A-I      intronic
chr19:44802051(-) A-I      intronic
chr19:44802080(-) A-I      intronic
chr19:44802266(-) A-I      intronic
chr19:44802226(-) A-I      intronic
chr19:44802233(-) A-I      intronic
chr19:44802228(-) A-I      intronic
chr19:44794765(-) A-I      intronic
chr19:44802215(-) A-I      intronic
chr19:44802148(-) A-I      intronic
chr19:44802140(-) A-I      intronic
chr19:44801765(-) A-I      intronic
chr19:44802189(-) A-I      intronic
chr19:44802177(-) A-I      intronic
chr19:44802186(-) A-I      intronic
chr19:44802723(-) A-I      intronic
chr19:44802150(-) A-I      intronic
chr19:44802099(-) A-I      intronic
chr19:44802645(-) A-I      intronic
chr19:44801853(-) A-I      intronic
chr19:44802203(-) A-I      intronic
chr19:44801888(-) A-I      intronic
chr19:44802185(-) A-I      intronic
chr19:44802124(-) A-I      intronic
chr19:44802724(-) A-I      intronic
chr19:44801713(-) A-I      intronic
chr19:44802744(-) A-I      intronic
chr19:44802236(-) A-I      intronic
chr19:44802258(-) A-I      intronic
chr19:44802117(-) A-I      intronic
chr19:44802025(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ZNF235
chr19:44793147(-) A-I exon CDS    21960545

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ZNF235
chr19:44732919-44732920(-) m6A 3'UTR       27773535
chr19:44732964-44732965(-) m6A 3'UTR       27773535
chr19:44733085-44733086(-) m6A 3'UTR       27773535
chr19:44738925-44738926(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr19:44738972-44738973(-) m6A 3'UTR       24284625//24981863//22608085
chr19:44738987-44738988(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr19:44739019-44739020(-) m6A CDS       24284625//24981863//27773535//22608085
chr19:44740372-44740373(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085
chr19:44740456-44740457(-) m6A 3'UTR//intron       24981863//27773535//22608085
chr19:44740489-44740490(-) m6A 3'UTR//intron       24981863//27773535//22608085
chr19:44740512-44740513(-) m6A 3'UTR//intron       24981863//27773535//22608085
chr19:44740520-44740521(-) m6A 3'UTR//intron       24981863//27773535//22608085
chr19:44740540-44740541(-) m6A 3'UTR//intron       24981863//27773535//22608085
chr19:44740598-44740599(-) m6A 3'UTR//intron       24981863//27773535//22608085
chr19:44740605-44740606(-) m6A 3'UTR//intron       24981863//27773535//22608085
chr19:44740708-44740709(-) m6A 3'UTR//intron       24209618//24981863//22608085
chr19:44740760-44740761(-) m6A 3'UTR//intron       24209618//24981863//27773535//22608085
chr19:44740780-44740781(-) m6A 3'UTR//intron       24209618//24981863//27773535//22608085
chr19:44740792-44740793(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085
chr19:44740876-44740877(-) m6A CDS//intron       24284625//24209618//24981863//27773535//22608085
chr19:44778938-44778939(-) m6A 3'UTR//intron       24209618//24981863//22608085
chr19:44778960-44778961(-) m6A 3'UTR//intron       24981863//22608085
chr19:44791166-44791167(-) m6A 3'UTR//exon//intron       24981863//27773535//22608085
chr19:44791209-44791210(-) m6A 3'UTR//exon//intron       24981863//27773535//22608085
chr19:44791220-44791221(-) m6A 3'UTR//exon//intron       24981863//27773535//22608085
chr19:44791277-44791278(-) m6A 3'UTR//exon//intron       24981863//27773535
chr19:44791712-44791713(-) m6A CDS//exon//intron       24981863
chr19:44791880-44791881(-) m6A CDS//exon//intron       27773535
chr19:44792552-44792553(-) m6A CDS//exon//intron       27773535
chr19:44792581-44792582(-) m6A CDS//exon//intron       27773535
chr19:44792691-44792692(-) m6A CDS//exon//intron       27773535//22608085
chr19:44792741-44792742(-) m6A CDS//exon//intron       24981863//27773535//22608085
chr19:44792750-44792751(-) m6A CDS//exon//intron       24981863//27773535//22608085
chr19:44792803-44792804(-) m6A CDS//exon//intron       27773535//22608085
chr19:44792810-44792811(-) m6A CDS//exon//intron       27773535//22608085
chr19:44792973-44792974(-) m6A CDS//exon//intron       27773535//22608085
chr19:44792986-44792987(-) m6A CDS//exon//intron       27773535//22608085
chr19:44793016-44793017(-) m6A CDS//exon//intron       24981863//27773535//22608085
chr19:44793225-44793226(-) m6A CDS//exon//intron       24981863//27773535//22608085
chr19:44793257-44793258(-) m6A CDS//exon//intron       24981863//27773535//22608085
chr19:44793345-44793346(-) m6A CDS//exon//intron       27773535//22608085
chr19:44803823-44803824(-) m6A CDS       27371828
chr19:44807589-44807590(-) m6A 5'UTR//CDS       27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ZNF235
Chromatin K562 cells     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)     -

Related Drug Information:


Resource Symbol Drug Name PubChem ID
RNAactDrug ebv-miR-BART2-5p
Panobinostat       6918837
Irinotecan       60838
Topotecan       60700
Dovitinib       135398510

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART2-5p
Interactor2: ZNF235

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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