Basic Information:

  VIRBase ID:  

VHID00293594

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART2-5p:  MIMAT0001000          PDHX:  NM_001166158     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART2-5p	PDHX
miRBase Accession/Entrez ID	MIMAT0001000	8050
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	DLDBP//E3BP//OPDX//PDHXD//PDX1//proX

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PDHX	chr11:34969621(+) A-I      intronic chr11:34994220(+) A-I      intronic chr11:34996317(+) A-I      intronic chr11:35030629(+) A-I      intronic chr11:34989795(+) A-I      intronic chr11:34989678(+) A-I      intronic chr11:34989636(+) A-I      intronic chr11:34989738(+) A-I      intronic chr11:35030441(+) A-I      intronic chr11:35023954(+) A-I      intronic chr11:35034605(+) A-I      intronic chr11:34939801(+) A-I      intronic chr11:35013364(+) A-I      intronic chr11:34996443(+) A-I      intronic chr11:35034604(+) A-I      intronic chr11:35030556(+) A-I      intronic chr11:34984944(+) A-I      intronic chr11:34988540(+) A-I      intronic chr11:34985079(+) A-I      intronic chr11:34989733(+) A-I      intronic chr11:34989787(+) A-I      intronic chr11:35006734(+) A-I      intronic chr11:35038257(+) A-I      intronic chr11:34988422(+) A-I      intronic chr11:34989685(+) A-I      intronic chr11:34996326(+) A-I      intronic chr11:34996344(+) A-I      intronic chr11:34985889(+) A-I      intronic chr11:34989730(+) A-I      intronic chr11:35038299(+) A-I      intronic chr11:34939802(+) A-I      intronic chr11:34989803(+) A-I      intronic chr11:34989707(+) A-I      intronic chr11:35030439(+) A-I      intronic chr11:34994078(+) A-I      intronic chr11:34939777(+) A-I      intronic chr11:34984965(+) A-I      intronic chr11:35034692(+) A-I      intronic chr11:34980122(+) A-I      intronic chr11:34939800(+) A-I      intronic chr11:35030551(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	PDHX	chr11:34989707(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PDHX	chr11:34937795-34937796(+) m6A 5'UTR//intron       24981863 chr11:34937827-34937828(+) m6A 5'UTR//intron       24981863 chr11:34937838-34937839(+) m6A 5'UTR//intron       24981863 chr11:34937845-34937846(+) m6A 5'UTR//intron       24981863 chr11:34938159-34938160(+) m6A 5'UTR//intron       24981863 chr11:34952998-34952999(+) m1A CDS//intron       26863196 chr11:34953004-34953005(+) m6A CDS//intron       22575960 chr11:34978937-34978938(+) m1A CDS//intron       26863196 chr11:34978994-34978995(+) Am CDS//intron       - chr11:34979004-34979005(+) m6A CDS//intron       24981863 chr11:34979052-34979053(+) m6A CDS//intron       24981863 chr11:34979079-34979080(+) m6A CDS//intron       24981863 chr11:34979109-34979110(+) m6A CDS//intron       24981863 chr11:34979122-34979123(+) m6A CDS//intron       24981863 chr11:34982005-34982006(+) m6A CDS//intron       24981863 chr11:34988198-34988199(+) m6A CDS//intron       24981863 chr11:34988213-34988214(+) m6A CDS//intron       24981863 chr11:34988240-34988241(+) m6A CDS//intron       24981863 chr11:34988300-34988301(+) m6A CDS//intron       - chr11:34988345-34988346(+) m6A CDS//intron       - chr11:35016655-35016656(+) m6A CDS//intron       24981863 chr11:35016690-35016691(+) m6A CDS//intron       24981863 chr11:35017352-35017353(+) m6A 3'UTR//intron       27773535 chr11:35017424-35017425(+) m6A 3'UTR//intron       27773535 chr11:35017444-35017445(+) m6A 3'UTR//intron       27773535 chr11:35017458-35017459(+) m6A 3'UTR//intron       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PDHX	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)     - Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells     - Ribosome Colon cancer cells     24393600

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	ebv-miR-BART2-5p	Panobinostat       6918837 Irinotecan       60838 Topotecan       60700 Dovitinib       135398510

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART2-5p
Interactor2: PDHX

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg