Detail Information

Basic Information:


  VIRBase ID:  

VHID00293305

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART2-5p:           SNTB1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART2-5p SNTB1
miRBase
Accession/Entrez ID		 MIMAT0001000 6641
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - 59-DAP//A1B//BSYN2//DAPA1B//SNT2//SNT2B1//TIP-43

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SNTB1
chr8:121590295(-) A-I      intronic
chr8:121633368(-) A-I      intronic
chr8:121742538(-) A-I      intronic
chr8:121742556(-) A-I      intronic
chr8:121743198(-) A-I      intronic
chr8:121743274(-) A-I      intronic
chr8:121782835(-) A-I      intronic
chr8:121782849(-) A-I      intronic
chr8:121782905(-) A-I      intronic
chr8:121783014(-) A-I      intronic
chr8:121709519(-) A-I      intronic
chr8:121602986(-) A-I      intronic
chr8:121640910(-) A-I      intronic
chr8:121745002(-) A-I      intronic
chr8:121578512(-) A-I      intronic
chr8:121578517(-) A-I      intronic
chr8:121784355(-) A-I      intronic
chr8:121785501(-) A-I      intronic
chr8:121785514(-) A-I      intronic
chr8:121564742(-) A-I      intronic
chr8:121564771(-) A-I      intronic
chr8:121564786(-) A-I      intronic
chr8:121564829(-) A-I      intronic
chr8:121577014(-) A-I      intronic
chr8:121577015(-) A-I      intronic
chr8:121577027(-) A-I      intronic
chr8:121577075(-) A-I      intronic
chr8:121577083(-) A-I      intronic
chr8:121578522(-) A-I      intronic
chr8:121578530(-) A-I      intronic
chr8:121578538(-) A-I      intronic
chr8:121579753(-) A-I      intronic
chr8:121579934(-) A-I      intronic
chr8:121584936(-) A-I      intronic
chr8:121633356(-) A-I      intronic
chr8:121633364(-) A-I      intronic
chr8:121590333(-) A-I      intronic
chr8:121590509(-) A-I      intronic
chr8:121591295(-) A-I      intronic
chr8:121591301(-) A-I      intronic
chr8:121591734(-) A-I      intronic
chr8:121602988(-) A-I      intronic
chr8:121602997(-) A-I      intronic
chr8:121603154(-) A-I      intronic
chr8:121623873(-) A-I      intronic
chr8:121624931(-) A-I      intronic
chr8:121625544(-) A-I      intronic
chr8:121627267(-) A-I      intronic
chr8:121627308(-) A-I      intronic
chr8:121633403(-) A-I      intronic
chr8:121633404(-) A-I      intronic
chr8:121640902(-) A-I      intronic
chr8:121640914(-) A-I      intronic
chr8:121785528(-) A-I      intronic
chr8:121681799(-) A-I      intronic
chr8:121689113(-) A-I      intronic
chr8:121689209(-) A-I      intronic
chr8:121689260(-) A-I      intronic
chr8:121742502(-) A-I      intronic
chr8:121742532(-) A-I      intronic
chr8:121743163(-) A-I      intronic
chr8:121578564(-) A-I      intronic
chr8:121627216(-) A-I      intronic
chr8:121625508(-) A-I      intronic
chr8:121579785(-) A-I      intronic
chr8:121743180(-) A-I      intronic
chr8:121583837(-) A-I      intronic
chr8:121784759(-) A-I      intronic
chr8:121579736(-) A-I      intronic
chr8:121624954(-) A-I      intronic
chr8:121742709(-) A-I      intronic
chr8:121787087(-) A-I      intronic
chr8:121783050(-) A-I      intronic
chr8:121627176(-) A-I      intronic
chr8:121641222(-) A-I      intronic
chr8:121783048(-) A-I      intronic
chr8:121625505(-) A-I      intronic
chr8:121564794(-) A-I      intronic
chr8:121562706(-) A-I      intronic
chr8:121576874(-) A-I      intronic
chr8:121578487(-) A-I      intronic
chr8:121577090(-) A-I      intronic
chr8:121782886(-) A-I      intronic
chr8:121787032(-) A-I      intronic
chr8:121625504(-) A-I      intronic
chr8:121625529(-) A-I      intronic
chr8:121564855(-) A-I      intronic
chr8:121622514(-) A-I      intronic
chr8:121583835(-) A-I      intronic
chr8:121743275(-) A-I      intronic
chr8:121590481(-) A-I      intronic
chr8:121606442(-) A-I      intronic
chr8:121782873(-) A-I      intronic
chr8:121782970(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SNTB1
chr8:121564763(-) T-C intron -    22484847
chr8:121564794(-) A-G intron -    22484847
chr8:121564855(-) A-G intron -    22484847
chr8:121577090(-) A-G intron -    22484847
chr8:121578487(-) A-G intron -    22484847
chr8:121622514(-) A-G intron -    22484847
chr8:121624919(-) A-G intron -    22484847
chr8:121624922(-) A-G intron -    22484847
chr8:121624954(-) A-G intron -    22484847
chr8:121625504(-) A-G intron -    22484847
chr8:121625505(-) A-G intron -    22484847
chr8:121625508(-) A-G intron -    22484847
chr8:121625509(-) A-G intron -    22484847
chr8:121625529(-) A-G intron -    22484847
chr8:121742641(-) A-G intron -    22484847
chr8:121742700(-) A-G intron -    22484847
chr8:121742709(-) A-G intron -    22484847
chr8:121743163(-) A-G intron -    22484847
chr8:121743180(-) A-G intron -    22484847
chr8:121743275(-) A-G intron -    22484847
chr8:121756118(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SNTB1
chr8:121550249-121550250(-) m6A 3'UTR       27773535
chr8:121550362-121550363(-) m6A 3'UTR       27773535
chr8:121550423-121550424(-) m6A 3'UTR       27773535
chr8:121550594-121550595(-) m6A 3'UTR       27773535
chr8:121550723-121550724(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr8:121550805-121550806(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22608085
chr8:121550819-121550820(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22608085
chr8:121550889-121550890(-) m6A 3'UTR       24284625//24981863//27773535//27371828//22608085
chr8:121550899-121550900(-) m6A 3'UTR       24284625//24981863//27773535//27371828//22608085
chr8:121550968-121550969(-) m6A 3'UTR       24284625//24981863//27773535//27371828//22608085
chr8:121551051-121551052(-) m6A 3'UTR       24981863//27773535//27371828
chr8:121551113-121551114(-) m6A 3'UTR       24981863//27773535//27371828
chr8:121551134-121551135(-) m6A CDS       24981863//27773535
chr8:121551201-121551202(-) m6A CDS       27773535
chr8:121583035-121583036(-) m6A exon//intron       27773535
chr8:121583075-121583076(-) m6A exon//intron       27773535
chr8:121583088-121583089(-) m6A exon//intron       27773535
chr8:121583132-121583133(-) m6A exon//intron       27773535
chr8:121583145-121583146(-) m6A exon//intron       27773535
chr8:121583156-121583157(-) m6A exon//intron       27773535
chr8:121583173-121583174(-) m6A exon//intron       27773535
chr8:121583189-121583190(-) m6A exon//intron       27773535
chr8:121583200-121583201(-) m6A exon//intron       27773535
chr8:121583356-121583357(-) m6A exon//intron       27773535
chr8:121583365-121583366(-) m6A exon//intron       27773535
chr8:121583466-121583467(-) m6A exon//intron       27773535
chr8:121583495-121583496(-) m6A exon//intron       27773535
chr8:121587406-121587407(-) m6A CDS//exon       27773535
chr8:121587435-121587436(-) m6A CDS//exon       27773535
chr8:121587444-121587445(-) m6A CDS//exon       27773535
chr8:121644736-121644737(-) m6A CDS//exon       27773535//27371828
chr8:121644834-121644835(-) m6A CDS//exon       27773535//27371828
chr8:121649977-121649978(-) m6A intron       27773535
chr8:121650008-121650009(-) m6A intron       27773535
chr8:121650059-121650060(-) m6A intron       27773535
chr8:121650073-121650074(-) m6A intron       27773535
chr8:121667176-121667177(-) m6A exon//intron       27773535
chr8:121706000-121706001(-) m6A CDS//exon       27773535
chr8:121706036-121706037(-) m6A CDS//exon       27773535
chr8:121706079-121706080(-) m6A CDS//exon       27773535//27371828
chr8:121823632-121823633(-) m6A CDS//exon       25456834//27773535//27371828//27773536
chr8:121823637-121823638(-) m6A CDS//exon       25456834//27773535//27371828//27773536
chr8:121823685-121823686(-) m6A CDS//exon       24209618//25456834//27773535//27371828//27773536
chr8:121823760-121823761(-) m6A CDS//exon       24209618//25456834//27773535//27371828//27773536
chr8:121823826-121823827(-) m6A CDS       24209618//25456834//27371828//27773536
chr8:121823899-121823900(-) m6A CDS       25456834//27371828//27773536
chr8:121823964-121823965(-) m6A CDS       25456834//27371828//27773536
chr8:121824228-121824229(-) m6A 5'UTR       25456834//27371828//27773536
chr8:121824273-121824274(-) m6A 5'UTR       25456834//27371828//27773536
chr8:121824847-121824848(-) m6A 5'UTR//intron       25456834
chr8:121824866-121824867(-) m6A 5'UTR//intron       25456834

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SNTB1
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)     -
Membrane HCC cell line (HepG2)     -
Nucleus HCC cell line (HepG2)     -
Ribosome Colon cancer cells     24393600

Related Drug Information:


Resource Symbol Drug Name PubChem ID
RNAactDrug ebv-miR-BART2-5p
Panobinostat       6918837
Irinotecan       60838
Topotecan       60700
Dovitinib       135398510

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART2-5p
Interactor2: SNTB1

Evidence Support:


Prediction-Evidence cRep//miRanda//Targetscan
Support Database RepTar//VmiReg

Starting a new search, please wait ...