Detail Information

Basic Information:


  VIRBase ID:  

VHID00290362

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.6040

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART1-5p:           NIN:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART1-5p NIN
miRBase
Accession/Entrez ID
MIMAT0000999 51199
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - SCKL7

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR NIN
chr14:51213829(-) A-I      intronic
chr14:51257250(-) A-I      intronic
chr14:51213839(-) A-I      intronic
chr14:51270742(-) A-I      intronic
chr14:51213824(-) A-I      intronic
chr14:51213810(-) A-I      intronic
chr14:51209029(-) A-I      ncRNA
chr14:51209007(-) A-I      ncRNA
chr14:51268016(-) A-I      intronic
chr14:51285033(-) A-I      intronic
chr14:51262610(-) A-I      intronic
chr14:51284997(-) A-I      intronic
chr14:51199724(-) A-I      intronic
chr14:51284995(-) A-I      intronic
chr14:51284929(-) A-I      intronic
chr14:51213815(-) A-I      intronic
chr14:51284919(-) A-I      intronic
chr14:51284518(-) A-I      intronic
chr14:51284701(-) A-I      intronic
chr14:51266581(-) A-I      intronic
chr14:51262614(-) A-I      intronic
chr14:51284783(-) A-I      intronic
chr14:51267625(-) A-I      intronic
chr14:51284698(-) A-I      intronic
chr14:51284680(-) A-I      intronic
chr14:51265635(-) A-I      intronic
chr14:51213718(-) A-I      intronic
chr14:51284530(-) A-I      intronic
chr14:51267561(-) A-I      intronic
chr14:51269940(-) A-I      intronic
chr14:51284519(-) A-I      intronic
chr14:51265629(-) A-I      intronic
chr14:51278756(-) A-I      intronic
chr14:51265618(-) A-I      intronic
chr14:51213712(-) A-I      intronic
chr14:51200014(-) A-I      intronic
chr14:51198385(-) A-I      intronic
chr14:51267566(-) A-I      intronic
chr14:51211493(-) A-I      intronic
chr14:51211386(-) A-I      intronic
chr14:51265569(-) A-I      intronic
chr14:51265586(-) A-I      intronic
chr14:51256163(-) A-I      intronic
chr14:51278655(-) A-I      intronic
chr14:51277609(-) A-I      intronic
chr14:51278628(-) A-I      intronic
chr14:51209376(-) A-I      intronic
chr14:51267986(-) A-I      intronic
chr14:51265573(-) A-I      intronic
chr14:51198068(-) A-I      intronic
chr14:51278600(-) A-I      intronic
chr14:51278106(-) A-I      intronic
chr14:51198166(-) A-I      intronic
chr14:51278028(-) A-I      intronic
chr14:51198311(-) A-I      intronic
chr14:51278427(-) A-I      intronic
chr14:51209259(-) A-I      intronic
chr14:51269902(-) A-I      intronic
chr14:51268002(-) A-I      intronic
chr14:51277586(-) A-I      intronic
chr14:51269865(-) A-I      intronic
chr14:51284572(-) A-I      intronic
chr14:51268067(-) A-I      intronic
chr14:51268010(-) A-I      intronic
chr14:51198371(-) A-I      intronic
chr14:51266526(-) A-I      intronic
chr14:51277517(-) A-I      intronic
chr14:51277175(-) A-I      intronic
chr14:51276867(-) A-I      intronic
chr14:51262535(-) A-I      intronic
chr14:51276862(-) A-I      intronic
chr14:51276837(-) A-I      intronic
chr14:51278030(-) A-I      intronic
chr14:51276827(-) A-I      intronic
chr14:51276760(-) A-I      intronic
chr14:51199538(-) A-I      intronic
chr14:51276724(-) A-I      intronic
chr14:51278452(-) A-I      intronic
chr14:51270866(-) A-I      intronic
chr14:51270794(-) A-I      intronic
chr14:51270682(-) A-I      intronic
chr14:51198368(-) A-I      intronic
chr14:51277622(-) A-I      intronic
chr14:51270785(-) A-I      intronic
chr14:51201683(-) A-I      intronic
chr14:51209925(-) A-I      intronic
chr14:51270781(-) A-I      intronic
chr14:51270783(-) A-I      intronic
chr14:51209240(-) A-I      intronic
chr14:51284571(-) A-I      intronic
chr14:51262533(-) A-I      intronic
chr14:51265676(-) A-I      intronic
chr14:51265758(-) A-I      intronic
chr14:51267988(-) A-I      intronic
chr14:51214340(-) A-I      intronic
chr14:51270774(-) A-I      intronic
chr14:51278426(-) A-I      intronic
chr14:51266666(-) A-I      intronic
chr14:51270025(-) A-I      intronic
chr14:51256203(-) A-I      intronic
chr14:51267593(-) A-I      intronic
chr14:51270024(-) A-I      intronic
chr14:51199543(-) A-I      intronic
chr14:51262589(-) A-I      intronic
chr14:51256142(-) A-I      intronic
chr14:51265670(-) A-I      intronic
chr14:51265612(-) A-I      intronic
chr14:51201533(-) A-I      intronic
chr14:51265665(-) A-I      intronic
chr14:51265661(-) A-I      intronic
chr14:51249935(-) A-I      intronic
chr14:51269989(-) A-I      intronic
chr14:51267985(-) A-I      intronic
chr14:51284613(-) A-I      intronic
chr14:51201083(-) A-I      intronic
chr14:51265637(-) A-I      intronic
chr14:51201005(-) A-I      intronic
chr14:51249934(-) A-I      intronic
chr14:51200012(-) A-I      intronic
chr14:51199699(-) A-I      intronic
chr14:51236492(-) A-I      intronic
chr14:51267991(-) A-I      intronic
chr14:51270842(-) A-I      intronic
chr14:51269960(-) A-I      intronic
chr14:51249915(-) A-I      intronic
chr14:51198487(-) A-I      intronic
chr14:51249905(-) A-I      intronic
chr14:51214455(-) A-I      intronic
chr14:51214376(-) A-I      intronic
chr14:51214366(-) A-I      intronic
chr14:51268036(-) A-I      intronic
chr14:51265673(-) A-I      intronic
chr14:51208989(-) A-I      ncRNA
chr14:51208968(-) A-I      ncRNA
chr14:51209034(-) A-I      ncRNA
chr14:51209005(-) A-I      ncRNA
chr14:51208884(-) A-I      ncRNA
chr14:51208940(-) A-I      ncRNA
chr14:51208929(-) A-I      ncRNA
chr14:51209017(-) A-I      ncRNA
chr14:51198297(-) A-I      intronic
chr14:51204503(-) A-I      intronic
chr14:51276886(-) A-I      intronic
chr14:51268100(-) A-I      intronic
chr14:51262578(-) A-I      intronic
chr14:51266569(-) A-I      intronic
chr14:51270758(-) A-I      intronic
chr14:51262566(-) A-I      intronic
chr14:51266504(-) A-I      intronic
chr14:51266571(-) A-I      intronic
chr14:51265667(-) A-I      intronic
chr14:51265564(-) A-I      intronic
chr14:51201677(-) A-I      intronic
chr14:51213704(-) A-I      intronic
chr14:51209250(-) A-I      intronic
chr14:51277167(-) A-I      intronic
chr14:51198137(-) A-I      intronic
chr14:51256206(-) A-I      intronic
chr14:51265645(-) A-I      intronic
chr14:51284941(-) A-I      intronic
chr14:51214195(-) A-I      intronic
chr14:51266646(-) A-I      intronic
chr14:51270738(-) A-I      intronic
chr14:51265700(-) A-I      intronic
chr14:51270788(-) A-I      intronic
chr14:51269964(-) A-I      intronic
chr14:51199703(-) A-I      intronic
chr14:51268055(-) A-I      intronic
chr14:51209260(-) A-I      intronic
chr14:51267598(-) A-I      intronic
chr14:51213701(-) A-I      intronic
chr14:51270808(-) A-I      intronic
chr14:51209208(-) A-I      intronic
chr14:51284729(-) A-I      intronic
chr14:51201676(-) A-I      intronic
chr14:51213734(-) A-I      intronic
chr14:51266610(-) A-I      intronic
chr14:51201460(-) A-I      intronic
chr14:51284707(-) A-I      intronic
chr14:51269988(-) A-I      intronic
chr14:51278373(-) A-I      intronic
chr14:51270782(-) A-I      intronic
chr14:51278726(-) A-I      intronic
chr14:51199584(-) A-I      intronic
chr14:51199700(-) A-I      intronic
chr14:51213868(-) A-I      intronic
chr14:51284797(-) A-I      intronic
chr14:51213794(-) A-I      intronic
chr14:51201495(-) A-I      intronic
chr14:51270706(-) A-I      intronic
chr14:51266611(-) A-I      intronic
chr14:51236056(-) A-I      intronic
chr14:51267670(-) A-I      intronic
chr14:51213748(-) A-I      intronic
chr14:51284785(-) A-I      intronic
chr14:51270687(-) A-I      intronic
chr14:51284539(-) A-I      intronic
chr14:51269890(-) A-I      intronic
chr14:51198340(-) A-I      intronic
chr14:51209244(-) A-I      intronic
chr14:51267780(-) A-I      intronic
chr14:51198517(-) A-I      intronic
chr14:51265721(-) A-I      intronic
chr14:51267779(-) A-I      intronic
chr14:51267609(-) A-I      intronic
chr14:51236380(-) A-I      intronic
chr14:51213789(-) A-I      intronic
chr14:51200055(-) A-I      intronic
chr14:51200870(-) A-I      intronic
chr14:51198510(-) A-I      intronic
chr14:51192377(-) A-I      intronic
chr14:51201082(-) A-I      intronic
chr14:51262635(-) A-I      intronic
chr14:51278059(-) A-I      intronic
chr14:51270752(-) A-I      intronic
chr14:51201629(-) A-I      intronic
chr14:51214328(-) A-I      intronic
chr14:51267924(-) A-I      intronic
chr14:51199570(-) A-I      intronic
chr14:51284883(-) A-I      intronic
chr14:51284627(-) A-I      intronic
chr14:51256213(-) A-I      intronic
chr14:51267665(-) A-I      intronic
chr14:51214226(-) A-I      intronic
chr14:51214369(-) A-I      intronic
chr14:51277484(-) A-I      intronic
chr14:51278100(-) A-I      intronic
chr14:51252693(-) A-I      intronic
chr14:51269904(-) A-I      intronic
chr14:51265690(-) A-I      intronic
chr14:51192381(-) A-I      intronic
chr14:51199755(-) A-I      intronic
chr14:51284994(-) A-I      intronic
chr14:51267695(-) A-I      intronic
chr14:51266520(-) A-I      intronic
chr14:51213823(-) A-I      intronic
chr14:51209778(-) A-I      intronic
chr14:51278478(-) A-I      intronic
chr14:51198492(-) A-I      intronic
chr14:51265679(-) A-I      intronic
chr14:51270019(-) A-I      intronic
chr14:51266654(-) A-I      intronic
chr14:51266523(-) A-I      intronic
chr14:51284852(-) A-I      intronic
chr14:51199548(-) A-I      intronic
chr14:51270057(-) A-I      intronic
chr14:51265722(-) A-I      intronic
chr14:51267493(-) A-I      intronic
chr14:51284637(-) A-I      intronic
chr14:51266455(-) A-I      intronic
chr14:51214230(-) A-I      intronic
chr14:51213796(-) A-I      intronic
chr14:51213682(-) A-I      intronic
chr14:51266659(-) A-I      intronic
chr14:51198125(-) A-I      intronic
chr14:51262621(-) A-I      intronic
chr14:51201473(-) A-I      intronic
chr14:51197991(-) A-I      intronic
chr14:51209338(-) A-I      intronic
chr14:51284657(-) A-I      intronic
chr14:51284496(-) A-I      intronic
chr14:51198432(-) A-I      intronic
chr14:51265701(-) A-I      intronic
chr14:51267684(-) A-I      intronic
chr14:51270762(-) A-I      intronic
chr14:51256858(-) A-I      intronic
chr14:51267905(-) A-I      intronic
chr14:51284562(-) A-I      intronic
chr14:51268004(-) A-I      intronic
chr14:51214456(-) A-I      intronic
chr14:51270683(-) A-I      intronic
chr14:51266535(-) A-I      intronic
chr14:51268084(-) A-I      intronic
chr14:51268082(-) A-I      intronic
chr14:51198388(-) A-I      intronic
chr14:51200044(-) A-I      intronic
chr14:51262575(-) A-I      intronic
chr14:51262573(-) A-I      intronic
chr14:51265674(-) A-I      intronic
chr14:51199567(-) A-I      intronic
chr14:51284893(-) A-I      intronic
chr14:51266647(-) A-I      intronic
chr14:51266593(-) A-I      intronic
chr14:51278455(-) A-I      intronic
chr14:51270797(-) A-I      intronic
chr14:51270719(-) A-I      intronic
chr14:51277153(-) A-I      intronic
chr14:51265675(-) A-I      intronic
chr14:51222474(-) A-I      intronic
chr14:51266465(-) A-I      intronic
chr14:51277415(-) A-I      intronic
chr14:51277585(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED NIN
chr14:51270797(-) A-I intron -    22327324
chr14:51209017(-) A-G intron -    22484847
chr14:51209250(-) A-G intron -    22484847
chr14:51209259(-) A-G intron -    22484847
chr14:51209260(-) A-G intron -    22484847
chr14:51213868(-) A-G intron -    22484847
chr14:51266504(-) A-G intron -    22484847
chr14:51266520(-) A-G intron -    22484847
chr14:51266523(-) A-G intron -    22484847
chr14:51266526(-) A-G intron -    22484847
chr14:51268084(-) A-G intron -    22484847
chr14:51270752(-) A-G intron -    22484847
chr14:51270762(-) A-G intron -    22484847
chr14:51270797(-) A-G intron -    22484847
chr14:51270842(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase NIN
chr14:51186538-51186539(-) m6A 3'UTR       27773535
chr14:51188504-51188505(-) m6A 3'UTR       24981863
chr14:51188595-51188596(-) m6A 3'UTR       24209618//24981863//28052920//22608085
chr14:51188628-51188629(-) m6A 3'UTR       24981863//28052920//22608085
chr14:51188655-51188656(-) m6A 3'UTR       24981863//28052920//22608085
chr14:51188671-51188672(-) m6A 3'UTR       24981863//28052920//22608085
chr14:51188704-51188705(-) m6A 3'UTR       24981863//28052920//22608085
chr14:51188772-51188773(-) m6A 3'UTR       24981863//27773535//22608085
chr14:51188831-51188832(-) m6A 3'UTR       22608085
chr14:51188915-51188916(-) m6A 3'UTR       22608085
chr14:51188925-51188926(-) m6A 3'UTR       22608085
chr14:51188951-51188952(-) m6A 3'UTR       22608085
chr14:51190032-51190033(-) m6A 3'UTR       24981863//22608085
chr14:51190087-51190088(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr14:51190130-51190131(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr14:51190175-51190176(-) m6A 3'UTR//exon       24284625//24209618//24981863//28052920//27773535//22608085
chr14:51190290-51190291(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr14:51190303-51190304(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr14:51190352-51190353(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr14:51190379-51190380(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr14:51192673-51192674(-) m6A 3'UTR//CDS//exon       24284625//24981863//27773535//27371828//22608085
chr14:51192718-51192719(-) m6A 3'UTR//CDS//exon       24284625//24981863//27773535//22608085
chr14:51192724-51192725(-) m6A 3'UTR//CDS//exon       24284625//24981863//27773535//22608085
chr14:51192730-51192731(-) m6A 3'UTR//CDS//exon       24284625//24981863//27773535//22608085
chr14:51192772-51192773(-) m6A 3'UTR//CDS//exon       24284625//24981863//22608085
chr14:51192779-51192780(-) m6A 3'UTR//CDS//exon       24284625//24981863//22608085
chr14:51192838-51192839(-) m6A exon//intron       22608085
chr14:51194366-51194367(-) m6A 3'UTR//intron       -
chr14:51194403-51194404(-) m6A 3'UTR//intron       -
chr14:51196254-51196255(-) m6A 3'UTR//CDS       -
chr14:51196263-51196264(-) m6A 3'UTR//CDS       -
chr14:51196268-51196269(-) m6A 3'UTR//CDS       -
chr14:51196276-51196277(-) m6A 3'UTR//CDS       -
chr14:51196295-51196296(-) m6A 3'UTR//CDS       -
chr14:51204878-51204879(-) m6A CDS       24981863
chr14:51204954-51204955(-) m6A CDS       24981863//27773535//27371828
chr14:51204962-51204963(-) m6A CDS       24981863//27773535//27371828
chr14:51206046-51206047(-) m6A CDS       24981863//27773535//27371828
chr14:51206059-51206060(-) m6A CDS       24981863//27773535//27371828
chr14:51206072-51206073(-) m6A CDS       24981863//27773535//27371828
chr14:51206109-51206110(-) m6A CDS//exon       27773535//27371828
chr14:51206137-51206138(-) m6A CDS//exon       27773535//27371828
chr14:51214712-51214713(-) m6A CDS       27773535
chr14:51214727-51214728(-) m6A CDS       27773535
chr14:51214746-51214747(-) m6A CDS       27773535
chr14:51214768-51214769(-) m6A CDS       27773535
chr14:51219256-51219257(-) m6A CDS       24981863//27773535//22608085
chr14:51219283-51219284(-) m6A CDS       24981863//28052920//27773535//22608085
chr14:51219305-51219306(-) m6A CDS       24981863//28052920//27773535//27371828//22608085
chr14:51219358-51219359(-) m6A CDS       24981863//28052920//27773535//27371828//22608085
chr14:51219367-51219368(-) m6A CDS       24981863//28052920//27773535//27371828//22608085
chr14:51219377-51219378(-) m6A CDS       24981863//28052920//27773535//27371828//22608085
chr14:51219386-51219387(-) m6A CDS       24981863//28052920//27773535//27371828//22608085
chr14:51219400-51219401(-) m6A CDS       24981863//28052920//27773535//27371828//22608085
chr14:51219428-51219429(-) m6A CDS       24981863//28052920//27773535//22608085
chr14:51221283-51221284(-) m6A CDS       24981863//28052920//27773535//22608085
chr14:51221328-51221329(-) m6A CDS       24981863//28052920//22608085
chr14:51221336-51221337(-) m6A CDS       24981863//28052920//22608085
chr14:51221487-51221488(-) m6A CDS       24981863//22608085
chr14:51223217-51223218(-) m6A CDS//intron       24981863//22608085
chr14:51223372-51223373(-) m6A CDS//intron       24284625//24209618//24981863//28052920//27773535//22608085
chr14:51223382-51223383(-) m6A CDS//intron       24284625//24209618//24981863//28052920//27773535//22608085
chr14:51223422-51223423(-) m6A CDS//intron       24284625//24209618//24981863//27773535//22608085
chr14:51223446-51223447(-) m6A CDS//intron       24284625//24209618//24981863//27773535//22608085
chr14:51223495-51223496(-) m6A CDS//intron       24284625//24209618//24981863//27773535//22608085
chr14:51223504-51223505(-) m6A CDS//intron       24284625//24209618//24981863//27773535//22608085
chr14:51223557-51223558(-) m6A CDS//intron       24209618//24981863//27773535//22608085
chr14:51223575-51223576(-) m6A CDS//intron       24209618//24981863//27773535//22608085
chr14:51223642-51223643(-) m6A CDS//intron       24209618//24981863//27773535//22608085
chr14:51223673-51223674(-) m6A CDS//intron       24209618//27773535//22608085
chr14:51223686-51223687(-) m6A CDS//intron       24209618//27773535//22608085
chr14:51223766-51223767(-) m6A CDS//intron       24209618//22608085
chr14:51223840-51223841(-) m6A CDS//intron       24209618//24981863//27773535//22608085
chr14:51223901-51223902(-) m6A CDS//intron       24209618//24981863//27773535//22608085
chr14:51223936-51223937(-) m6A CDS//intron       24209618//24981863//27773535//22608085
chr14:51224045-51224046(-) m6A CDS//intron       24209618//24981863//27773535//22608085
chr14:51224079-51224080(-) m6A CDS//intron       24209618//24981863//27773535//22608085
chr14:51224084-51224085(-) m6A CDS//intron       24209618//24981863//27773535//22608085
chr14:51224109-51224110(-) m6A CDS//intron       24209618//24981863//22608085
chr14:51224132-51224133(-) m6A CDS//intron       24209618//24981863//22608085
chr14:51224176-51224177(-) m6A CDS//intron       24209618//24981863//27773535//22608085
chr14:51224182-51224183(-) m6A CDS//intron       24209618//24981863//27773535//22608085
chr14:51224193-51224194(-) m6A CDS//intron       24209618//24981863//27773535//22608085
chr14:51224252-51224253(-) m6A CDS//intron       24209618//24981863//27773535//22608085
chr14:51224286-51224287(-) m6A CDS//intron       24209618//24981863//27773535//22608085
chr14:51224358-51224359(-) m6A CDS//intron       24209618//24981863//27773535//22608085
chr14:51224384-51224385(-) m6A CDS//intron       24209618//24981863//27773535//22608085
chr14:51224522-51224523(-) m6A CDS//intron       24209618//24981863//27773535//22608085
chr14:51224705-51224706(-) m6A CDS//intron       24209618//25456834//24981863//27773535//27371828//22608085
chr14:51224749-51224750(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr14:51224772-51224773(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22608085
chr14:51224822-51224823(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22608085
chr14:51224834-51224835(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22608085
chr14:51224906-51224907(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22608085
chr14:51224965-51224966(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr14:51224985-51224986(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr14:51224994-51224995(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr14:51225011-51225012(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr14:51225030-51225031(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr14:51225038-51225039(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr14:51225049-51225050(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr14:51225094-51225095(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr14:51225112-51225113(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085
chr14:51225200-51225201(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27371828//27773536//22608085
chr14:51225210-51225211(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27371828//27773536//22608085
chr14:51225316-51225317(-) m6A CDS//intron       24209618//24981863//27773535//22608085
chr14:51225334-51225335(-) m6A CDS//intron       24209618//24981863//27773535//22608085
chr14:51226645-51226646(-) m6A CDS       24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr14:51226690-51226691(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr14:51226722-51226723(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr14:51226783-51226784(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr14:51226836-51226837(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr14:51226867-51226868(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr14:51226939-51226940(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr14:51226972-51226973(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr14:51227015-51227016(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//22608085
chr14:51227046-51227047(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//22608085
chr14:51228525-51228526(-) m6A CDS       24209618//24981863//27773535//22608085
chr14:51228541-51228542(-) m6A CDS       24209618//24981863//27773535//22608085
chr14:51228555-51228556(-) m6A CDS       24209618//24981863//27773535//22608085
chr14:51228567-51228568(-) m6A CDS       27773535
chr14:51230547-51230548(-) m6A CDS       27773535
chr14:51233063-51233064(-) m6A CDS       27773535
chr14:51237127-51237128(-) m6A CDS       24981863
chr14:51237139-51237140(-) m6A CDS       24981863
chr14:51237149-51237150(-) m6A CDS       24981863//28052920//27773535
chr14:51237171-51237172(-) m6A CDS       24981863//28052920//27773535
chr14:51237177-51237178(-) m6A CDS       24981863//28052920//27773535
chr14:51237231-51237232(-) m6A CDS       24981863//28052920//27773535
chr14:51237276-51237277(-) m6A CDS       24981863//28052920//27773535
chr14:51237656-51237657(-) m6A CDS       24981863
chr14:51288607-51288608(-) m6A CDS//exon       -
chr14:51288620-51288621(-) m6A CDS//exon       22608085
chr14:51288678-51288679(-) m6A 5'UTR//CDS//exon       24209618//22608085
chr14:51288754-51288755(-) m6A CDS//exon//intron       24209618//22608085
chr14:51297191-51297192(-) m6A 5'UTR//exon       27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate NIN
Centrosome Cells (HeLa-Kyoto|HeLa)     33649340
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HeLa-S3 cells     -
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Ribosome Colon cancer cells     24393600

Related Drug Information:


Resource Symbol Drug Name PubChem ID
RNAactDrug ebv-miR-BART1-5p

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART1-5p
Interactor2: NIN

Evidence Support:


Weak-Evidence PAR-CLIP
Prediction-Evidence cRep//miRanda//PARalyzer//Targetscan
Support Database RepTar//ViRBase//VIRmiRNA//VmiReg

References:


PMID 22100165 Target region 3'UTR
Source RepTar//ViRBase//VIRmiRNA//VmiReg Interactor1 expression None
Tissue or cell line BC-1 cells Interactor2 expression None
Description Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites.Clusters with seed matches to expressed miRNAs were considered candidate target sites. Of the clusters mapping to human 3'UTRs, 69% (BC-1) and 70% (BC-3) had seed matches to expressed miRNAs (Tables S6).Table S6A BC-1 derived 3'UTR clusters with seed matches to expressed miRNAs.

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