Detail Information

Basic Information:


  VIRBase ID:  

VHID00290154

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART1-5p:           PIGN:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART1-5p PIGN
miRBase
Accession/Entrez ID		 MIMAT0000999 23556
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - MCAHS//MCAHS1//MCD4//MDC4//PIG-N

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR PIGN
chr18:59721921(-) A-I      intronic
chr18:59794579(-) A-I      intronic
chr18:59721944(-) A-I      intronic
chr18:59721920(-) A-I      intronic
chr18:59774787(-) A-I      intronic
chr18:59744471(-) A-I      intronic
chr18:59721958(-) A-I      intronic
chr18:59721951(-) A-I      intronic
chr18:59841371(-) A-I      intronic
chr18:59803746(-) A-I      intronic
chr18:59801398(-) A-I      intronic
chr18:59804937(-) A-I      intronic
chr18:59799912(-) A-I      intronic
chr18:59799892(-) A-I      intronic
chr18:59776003(-) A-I      intronic
chr18:59849113(-) A-I      intronic
chr18:59849088(-) A-I      intronic
chr18:59848840(-) A-I      intronic
chr18:59846734(-) A-I      intronic
chr18:59845806(-) A-I      intronic
chr18:59803776(-) A-I      intronic
chr18:59840739(-) A-I      intronic
chr18:59840684(-) A-I      intronic
chr18:59836205(-) A-I      intronic
chr18:59834756(-) A-I      intronic
chr18:59834620(-) A-I      intronic
chr18:59827224(-) A-I      intronic
chr18:59827153(-) A-I      intronic
chr18:59826228(-) A-I      intronic
chr18:59823702(-) A-I      intronic
chr18:59775999(-) A-I      intronic
chr18:59775865(-) A-I      intronic
chr18:59804848(-) A-I      intronic
chr18:59804849(-) A-I      intronic
chr18:59804863(-) A-I      intronic
chr18:59801443(-) A-I      intronic
chr18:59801537(-) A-I      intronic
chr18:59801538(-) A-I      intronic
chr18:59801541(-) A-I      intronic
chr18:59801561(-) A-I      intronic
chr18:59801562(-) A-I      intronic
chr18:59802945(-) A-I      intronic
chr18:59803020(-) A-I      intronic
chr18:59803038(-) A-I      intronic
chr18:59803043(-) A-I      intronic
chr18:59803738(-) A-I      intronic
chr18:59804883(-) A-I      intronic
chr18:59817371(-) A-I      intronic
chr18:59744592(-) A-I      intronic
chr18:59803758(-) A-I      intronic
chr18:59823692(-) A-I      intronic
chr18:59803764(-) A-I      intronic
chr18:59834635(-) A-I      intronic
chr18:59823695(-) A-I      intronic
chr18:59803775(-) A-I      intronic
chr18:59743288(-) A-I      intronic
chr18:59775962(-) A-I      intronic
chr18:59803795(-) A-I      intronic
chr18:59774623(-) A-I      intronic
chr18:59774624(-) A-I      intronic
chr18:59774677(-) A-I      intronic
chr18:59774743(-) A-I      intronic
chr18:59728741(-) A-I      intronic
chr18:59840746(-) A-I      intronic
chr18:59801460(-) A-I      intronic
chr18:59726344(-) A-I      intronic
chr18:59804852(-) A-I      intronic
chr18:59801477(-) A-I      intronic
chr18:59804943(-) A-I      intronic
chr18:59835335(-) A-I      intronic
chr18:59802956(-) A-I      intronic
chr18:59840755(-) A-I      intronic
chr18:59726164(-) A-I      intronic
chr18:59834685(-) A-I      intronic
chr18:59817283(-) A-I      intronic
chr18:59836281(-) A-I      intronic
chr18:59836227(-) A-I      intronic
chr18:59743439(-) A-I      intronic
chr18:59835334(-) A-I      intronic
chr18:59817282(-) A-I      intronic
chr18:59776001(-) A-I      intronic
chr18:59799909(-) A-I      intronic
chr18:59738177(-) A-I      intronic
chr18:59775980(-) A-I      intronic
chr18:59783177(-) A-I      intronic
chr18:59827935(-) A-I      intronic
chr18:59801577(-) A-I      intronic
chr18:59801622(-) A-I      intronic
chr18:59744528(-) A-I      intronic
chr18:59840627(-) A-I      intronic
chr18:59804798(-) A-I      intronic
chr18:59853380(-) A-I      intronic
chr18:59803855(-) A-I      intronic
chr18:59826430(-) A-I      intronic
chr18:59849097(-) A-I      intronic
chr18:59827878(-) A-I      intronic
chr18:59799830(-) A-I      intronic
chr18:59834717(-) A-I      intronic
chr18:59801502(-) A-I      intronic
chr18:59827879(-) A-I      intronic
chr18:59804810(-) A-I      intronic
chr18:59836284(-) A-I      intronic
chr18:59802962(-) A-I      intronic
chr18:59826342(-) A-I      intronic
chr18:59774704(-) A-I      intronic
chr18:59803642(-) A-I      intronic
chr18:59840756(-) A-I      intronic
chr18:59801578(-) A-I      intronic
chr18:59803027(-) A-I      intronic
chr18:59794995(-) A-I      intronic
chr18:59801499(-) A-I      intronic
chr18:59799911(-) A-I      intronic
chr18:59802933(-) A-I      intronic
chr18:59848924(-) A-I      intronic
chr18:59801463(-) A-I      intronic
chr18:59846867(-) A-I      intronic
chr18:59804912(-) A-I      intronic
chr18:59774750(-) A-I      intronic
chr18:59804942(-) A-I      intronic
chr18:59836237(-) A-I      intronic
chr18:59836320(-) A-I      intronic
chr18:59721853(-) A-I      intronic
chr18:59803024(-) A-I      intronic
chr18:59823791(-) A-I      intronic
chr18:59803030(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED PIGN
chr18:59794549(-) A-G intron -    22484847
chr18:59776048(-) A-G intron -    22484847
chr18:59776109(-) A-G intron -    22484847
chr18:59801577(-) A-G intron -    22484847
chr18:59801578(-) A-G intron -    22484847
chr18:59801598(-) A-G intron -    22484847
chr18:59827935(-) A-G intron -    22484847
chr18:59836320(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase PIGN
chr18:59711556-59711557(-) m6A 3'UTR       27773535
chr18:59711569-59711570(-) m6A 3'UTR       27773535
chr18:59711625-59711626(-) m6A 3'UTR       27773535
chr18:59711655-59711656(-) m6A 3'UTR       27773535
chr18:59711679-59711680(-) m6A 3'UTR       27773535
chr18:59712931-59712932(-) m6A 3'UTR//exon       24981863
chr18:59713109-59713110(-) m6A CDS//exon       24981863
chr18:59713121-59713122(-) m6A CDS//exon       24981863
chr18:59713127-59713128(-) m6A CDS//exon       24981863
chr18:59854168-59854169(-) m6A 5'UTR//exon//intron       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate PIGN
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)|K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Membrane HCC cell line (HepG2)|K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Ribosome HEK-293 cells     22199352
Ribosome Colon cancer cells     24393600

Related Drug Information:


Resource Symbol Drug Name PubChem ID
RNAactDrug ebv-miR-BART1-5p
Panobinostat       6918837
Irinotecan       60838
Topotecan       60700
l-685,458       5479543
Palbociclib       5330286
Dovitinib       135398510
Crizotinib       11626560

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART1-5p
Interactor2: PIGN

Evidence Support:


Prediction-Evidence cRep//PITA//Targetscan
Support Database RepTar//VmiReg

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