Detail Information

Basic Information:


  VIRBase ID:  

VHID00290039

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.5711

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART1-5p:           CLUAP1:      

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Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART1-5p CLUAP1
miRBase
Accession/Entrez ID		 MIMAT0000999 23059
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - CFAP22//FAP22//IFT38

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CLUAP1
chr16:3574098(+) A-I      intronic
chr16:3557036(+) A-I      intronic
chr16:3556589(+) A-I      intronic
chr16:3575789(+) A-I      intronic
chr16:3575757(+) A-I      intronic
chr16:3575649(+) A-I      intronic
chr16:3556741(+) A-I      intronic
chr16:3575634(+) A-I      intronic
chr16:3556636(+) A-I      intronic
chr16:3557081(+) A-I      intronic
chr16:3555118(+) A-I      intronic
chr16:3571974(+) A-I      intronic
chr16:3573813(+) A-I      intronic
chr16:3570135(+) A-I      intronic
chr16:3552294(+) A-I      intronic
chr16:3556642(+) A-I      intronic
chr16:3557037(+) A-I      intronic
chr16:3574066(+) A-I      intronic
chr16:3556573(+) A-I      intronic
chr16:3556570(+) A-I      intronic
chr16:3575633(+) A-I      intronic
chr16:3556777(+) A-I      intronic
chr16:3571984(+) A-I      intronic
chr16:3559062(+) A-I      intronic
chr16:3559129(+) A-I      intronic
chr16:3562286(+) A-I      intronic
chr16:3562096(+) A-I      intronic
chr16:3565133(+) A-I      intronic
chr16:3561923(+) A-I      intronic
chr16:3557039(+) A-I      intronic
chr16:3557319(+) A-I      intronic
chr16:3557075(+) A-I      intronic
chr16:3552223(+) A-I      intronic
chr16:3562293(+) A-I      intronic
chr16:3557314(+) A-I      intronic
chr16:3575628(+) A-I      intronic
chr16:3574079(+) A-I      intronic
chr16:3552252(+) A-I      intronic
chr16:3552297(+) A-I      intronic
chr16:3571922(+) A-I      intronic
chr16:3552206(+) A-I      intronic
chr16:3551745(+) A-I      intronic
chr16:3556572(+) A-I      intronic
chr16:3565174(+) A-I      intronic
chr16:3572293(+) A-I      intronic
chr16:3575802(+) A-I      intronic
chr16:3559153(+) A-I      intronic
chr16:3557501(+) A-I      intronic
chr16:3559170(+) A-I      intronic
chr16:3561932(+) A-I      intronic
chr16:3557480(+) A-I      intronic
chr16:3557515(+) A-I      intronic
chr16:3565134(+) A-I      intronic
chr16:3553037(+) A-I      intronic
chr16:3554900(+) A-I      intronic
chr16:3553051(+) A-I      intronic
chr16:3552333(+) A-I      intronic
chr16:3587423(+) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CLUAP1
chr16:3557081(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CLUAP1
chr16:3551056-3551057(+) m6A 5'UTR       24981863
chr16:3552046-3552047(+) m6A 5'UTR//intron       24981863
chr16:3552055-3552056(+) m6A 5'UTR//intron       24981863
chr16:3556343-3556344(+) m6A CDS//intron       24284625//24981863
chr16:3556372-3556373(+) m6A CDS//intron       24284625//24981863
chr16:3556377-3556378(+) m6A CDS//intron       24284625//24981863
chr16:3569999-3570000(+) Gm 3'UTR//CDS       -
chr16:3570019-3570020(+) m6A 3'UTR//CDS       24981863
chr16:3573185-3573186(+) m6A 3'UTR//CDS       24981863
chr16:3580650-3580651(+) m6A 3'UTR//CDS//exon       22575960
chr16:3582789-3582790(+) m6A 3'UTR//CDS//exon       24981863//22575960
chr16:3582827-3582828(+) m6A 3'UTR//CDS//exon       24981863//22575960
chr16:3582998-3582999(+) m6A 3'UTR//exon//intron       27371828
chr16:3585758-3585759(+) m6A 3'UTR//intron       27371828
chr16:3586125-3586126(+) m6A 3'UTR//CDS       24209618//24981863//22608085
chr16:3586240-3586241(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//22575960//22608085
chr16:3586286-3586287(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085
chr16:3586302-3586303(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085
chr16:3586310-3586311(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085
chr16:3586328-3586329(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085
chr16:3586378-3586379(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085
chr16:3586504-3586505(+) m6A 3'UTR       22608085
chr16:3586546-3586547(+) m6A 3'UTR       22608085
chr16:3586552-3586553(+) m6A 3'UTR       22608085
chr16:3586622-3586623(+) m6A 3'UTR       24981863
chr16:3586645-3586646(+) m6A 3'UTR       24981863
chr16:3586659-3586660(+) m6A 3'UTR       24284625//24981863
chr16:3586683-3586684(+) m6A 3'UTR       24284625//24981863
chr16:3586716-3586717(+) m6A 3'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate CLUAP1
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -

Related Drug Information:


Resource Symbol Drug Name PubChem ID
RNAactDrug ebv-miR-BART1-5p
Panobinostat       6918837
Irinotecan       60838
Topotecan       60700
l-685,458       5479543
Palbociclib       5330286
Dovitinib       135398510
Crizotinib       11626560

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART1-5p
Interactor2: CLUAP1

Evidence Support:


Weak-Evidence PAR-CLIP
Prediction-Evidence PARalyzer
Support Database ViRBase//VIRmiRNA

References:


PMID 22291592 Target region CDS
Source ViRBase//VIRmiRNA Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified an additional 2,972 CDS miRNA-interaction sites present in at least two libraries, 89.7% of which could be assigned to a miRNA (Table S7).

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