Detail Information

Basic Information:


  VIRBase ID:  

VHID00289645

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART1-5p:           SCAF11:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART1-5p SCAF11
miRBase
Accession/Entrez ID		 MIMAT0000999 9169
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - CASP11//SFRS2IP//SIP1//SRRP129//SRSF2IP

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SCAF11
chr12:46374532(-) A-I      intronic
chr12:46374511(-) A-I      intronic
chr12:46374537(-) A-I      intronic
chr12:46374568(-) A-I      intronic
chr12:46348436(-) A-I      intronic
chr12:46348425(-) A-I      intronic
chr12:46374536(-) A-I      intronic
chr12:46374546(-) A-I      intronic
chr12:46374571(-) A-I      intronic
chr12:46319170(-) A-I      intronic
chr12:46314930(-) A-I      3'UTR
chr12:46314939(-) A-I      3'UTR
chr12:46377401(-) A-I      intronic
chr12:46374547(-) A-I      intronic
chr12:46374531(-) A-I      intronic
chr12:46377351(-) A-I      intronic
chr12:46363574(-) A-I      intronic
chr12:46363550(-) A-I      intronic
chr12:46348462(-) A-I      intronic
chr12:46330174(-) A-I      intronic
chr12:46361389(-) A-I      intronic
chr12:46348460(-) A-I      intronic
chr12:46330104(-) A-I      intronic
chr12:46361210(-) A-I      intronic
chr12:46361192(-) A-I      intronic
chr12:46359324(-) A-I      intronic
chr12:46347203(-) A-I      intronic
chr12:46358448(-) A-I      intronic
chr12:46359285(-) A-I      intronic
chr12:46353043(-) A-I      intronic
chr12:46359370(-) A-I      intronic
chr12:46348405(-) A-I      intronic
chr12:46330138(-) A-I      intronic
chr12:46359369(-) A-I      intronic
chr12:46359293(-) A-I      intronic
chr12:46332043(-) A-I      intronic
chr12:46330038(-) A-I      intronic
chr12:46330144(-) A-I      intronic
chr12:46332093(-) A-I      intronic
chr12:46363631(-) A-I      intronic
chr12:46329972(-) A-I      intronic
chr12:46319275(-) A-I      intronic
chr12:46330118(-) A-I      intronic
chr12:46348469(-) A-I      intronic
chr12:46334747(-) A-I      intronic
chr12:46363643(-) A-I      intronic
chr12:46332196(-) A-I      intronic
chr12:46332068(-) A-I      intronic
chr12:46319091(-) A-I      intronic
chr12:46334675(-) A-I      intronic
chr12:46347313(-) A-I      intronic
chr12:46348253(-) A-I      intronic
chr12:46319216(-) A-I      intronic
chr12:46351698(-) A-I      intronic
chr12:46330010(-) A-I      intronic
chr12:46348418(-) A-I      intronic
chr12:46332189(-) A-I      intronic
chr12:46317477(-) A-I      intronic
chr12:46339404(-) A-I      intronic
chr12:46348513(-) A-I      intronic
chr12:46332106(-) A-I      intronic
chr12:46361413(-) A-I      intronic
chr12:46347257(-) A-I      intronic
chr12:46332220(-) A-I      intronic
chr12:46330102(-) A-I      intronic
chr12:46347244(-) A-I      intronic
chr12:46348501(-) A-I      intronic
chr12:46348426(-) A-I      intronic
chr12:46314775(-) A-I      3'UTR
chr12:46314862(-) A-I      3'UTR
chr12:46314863(-) A-I      3'UTR
chr12:46314868(-) A-I      3'UTR
chr12:46314887(-) A-I      3'UTR
chr12:46314904(-) A-I      3'UTR
chr12:46332226(-) A-I      intronic
chr12:46332150(-) A-I      intronic
chr12:46330206(-) A-I      intronic
chr12:46334588(-) A-I      intronic
chr12:46348415(-) A-I      intronic
chr12:46347325(-) A-I      intronic
chr12:46330033(-) A-I      intronic
chr12:46332014(-) A-I      intronic
chr12:46351708(-) A-I      intronic
chr12:46334782(-) A-I      intronic
chr12:46330063(-) A-I      intronic
chr12:46358374(-) A-I      intronic
chr12:46348445(-) A-I      intronic
chr12:46334648(-) A-I      intronic
chr12:46329959(-) A-I      intronic
chr12:46347270(-) A-I      intronic
chr12:46347251(-) A-I      intronic
chr12:46319293(-) A-I      intronic
chr12:46351784(-) A-I      intronic
chr12:46353045(-) A-I      intronic
chr12:46334690(-) A-I      intronic
chr12:46348152(-) A-I      intronic
chr12:46332236(-) A-I      intronic
chr12:46329990(-) A-I      intronic
chr12:46348429(-) A-I      intronic
chr12:46348451(-) A-I      intronic
chr12:46332081(-) A-I      intronic
chr12:46333464(-) A-I      intronic
chr12:46330098(-) A-I      intronic
chr12:46329958(-) A-I      intronic
chr12:46366197(-) A-I      intronic
chr12:46361305(-) A-I      intronic
chr12:46377396(-) A-I      intronic
chr12:46353049(-) A-I      intronic
chr12:46329992(-) A-I      intronic
chr12:46378751(-) A-I      intronic
chr12:46347267(-) A-I      intronic
chr12:46332225(-) A-I      intronic
chr12:46330103(-) A-I      intronic
chr12:46330089(-) A-I      intronic
chr12:46360920(-) A-I      intronic
chr12:46341991(-) A-I      intronic
chr12:46329962(-) A-I      intronic
chr12:46351778(-) A-I      intronic
chr12:46348437(-) A-I      intronic
chr12:46347199(-) A-I      intronic
chr12:46358444(-) A-I      intronic
chr12:46351710(-) A-I      intronic
chr12:46351754(-) A-I      intronic
chr12:46359392(-) A-I      intronic
chr12:46330143(-) A-I      intronic
chr12:46334595(-) A-I      intronic
chr12:46319214(-) A-I      intronic
chr12:46319206(-) A-I      intronic
chr12:46347318(-) A-I      intronic
chr12:46347291(-) A-I      intronic
chr12:46377397(-) A-I      intronic
chr12:46364074(-) A-I      intronic
chr12:46333469(-) A-I      intronic
chr12:46362707(-) A-I      intronic
chr12:46334685(-) A-I      intronic
chr12:46348468(-) A-I      intronic
chr12:46332101(-) A-I      intronic
chr12:46314773(-) A-I      3'UTR
chr12:46314903(-) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SCAF11
chr12:46348642(-) A-I intron -    15342557
chr12:46348992(-) A-I intron -    15342557   //15258596
chr12:46348995(-) A-I intron -    15342557   //15258596
chr12:46349036(-) A-I intron -    15342557   //15258596
chr12:46349174(-) A-I intron -    15342557   //15258596
chr12:46347291(-) A-I intron -    21960545   //22327324
chr12:46334675(-) A-I intron -    21960545
chr12:46314774(-) G-A exon 3'UTR    22484847
chr12:46347244(-) A-G intron -    22484847
chr12:46347251(-) A-G intron -    22484847
chr12:46347267(-) A-G intron -    22484847
chr12:46347291(-) A-G intron -    22484847
chr12:46347313(-) A-G intron -    22484847
chr12:46348437(-) A-G intron -    22484847
chr12:46348445(-) A-G intron -    22484847
chr12:46348992(-) A-G intron -    22484847
chr12:46348995(-) A-G intron -    22484847
chr12:46349016(-) A-G intron -    22484847
chr12:46349036(-) A-G intron -    22484847
chr12:46351710(-) A-G intron -    22484847
chr12:46353045(-) A-G intron -    22484847
chr12:46377396(-) A-G intron -    22484847
chr12:46377397(-) A-G intron -    22484847
chr12:46319293(-) A-G intron -    22484847
chr12:46330010(-) A-G intron -    22484847
chr12:46330033(-) A-G intron -    22484847
chr12:46330063(-) A-G intron -    22484847
chr12:46330102(-) A-G intron -    22484847
chr12:46330103(-) A-G intron -    22484847
chr12:46332081(-) A-G intron -    22484847
chr12:46332106(-) A-G intron -    22484847
chr12:46332220(-) A-G intron -    22484847
chr12:46332225(-) A-G intron -    22484847
chr12:46332226(-) A-G intron -    22484847
chr12:46332236(-) A-G intron -    22484847
chr12:46334768(-) A-T intron -    22484847
chr12:46341510(-) T-C intron -    22484847
chr12:46351942(-) G-A intron -    22484847
chr12:46358374(-) A-G intron -    22484847
chr12:46358444(-) A-G intron -    22484847
chr12:46361413(-) A-G intron -    22484847
chr12:46362707(-) A-G intron -    22484847
chr12:46364074(-) A-G intron -    22484847
chr12:46366197(-) A-G intron -    22484847
chr12:46366368(-) A-T intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SCAF11
chr12:46315348-46315349(-) m6A 3'UTR//intron       27773535
chr12:46315500-46315501(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085
chr12:46315571-46315572(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085
chr12:46315809-46315810(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr12:46315840-46315841(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr12:46315860-46315861(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr12:46315871-46315872(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr12:46315909-46315910(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr12:46316203-46316204(-) m6A CDS//intron       24981863//27773535//22608085
chr12:46316726-46316727(-) m6A CDS//exon//intron       24981863//27773535
chr12:46316841-46316842(-) m6A CDS//exon       27773535
chr12:46318591-46318592(-) m6A CDS       24284625//24209618//24981863//26404942//27773535
chr12:46318694-46318695(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr12:46318836-46318837(-) m6A CDS//exon       24284625//24209618//24981863//28052920//27773535//27371828//22608085
chr12:46318841-46318842(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr12:46319928-46319929(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr12:46319936-46319937(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr12:46319949-46319950(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr12:46320004-46320005(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr12:46320026-46320027(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr12:46320056-46320057(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr12:46320099-46320100(-) m6A CDS//exon       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr12:46320126-46320127(-) m6A CDS//exon       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085
chr12:46320160-46320161(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr12:46320180-46320181(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22608085
chr12:46320298-46320299(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr12:46320377-46320378(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr12:46320397-46320398(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr12:46320438-46320439(-) m6A CDS//exon       24284625//24209618//24981863//28052920//27773535//27371828//22608085
chr12:46320510-46320511(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//22608085
chr12:46320644-46320645(-) m6A CDS       24209618//24981863//28052920//27773535//22608085
chr12:46320698-46320699(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//27371828//27773536//22608085
chr12:46320811-46320812(-) m6A CDS       24284625//24981863//28052920//27773535//27371828//27773536//22608085
chr12:46320824-46320825(-) m6A CDS       24284625//24981863//28052920//27773535//27371828//27773536//22608085
chr12:46321016-46321017(-) m6A CDS       24284625//24981863//27773535//27371828//22608085
chr12:46321066-46321067(-) m6A CDS       24284625//24981863//27773535//27371828//22608085
chr12:46321133-46321134(-) m6A CDS       24284625//24981863//27773535//22608085
chr12:46321178-46321179(-) m6A CDS       24284625//24981863//27773535//22608085
chr12:46321257-46321258(-) m6A CDS       24284625//24981863//27773535//22608085
chr12:46321281-46321282(-) m6A CDS       24284625//24981863//27773535//22608085
chr12:46321348-46321349(-) m6A CDS       24284625//24981863//27773535//27371828//22575960//22608085
chr12:46321374-46321375(-) m6A CDS       24284625//24981863//27773535//27371828//22575960//22608085
chr12:46321385-46321386(-) m6A CDS       24284625//24981863//27773535//27371828//22575960//22608085
chr12:46321407-46321408(-) Tm CDS       -
chr12:46321413-46321414(-) m6A CDS       24284625//24981863//27773535//27371828//22575960//22608085
chr12:46321462-46321463(-) m6A CDS       24284625//24981863//27773535//27371828//22608085
chr12:46321498-46321499(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr12:46321565-46321566(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr12:46321611-46321612(-) m6A CDS       -
chr12:46321615-46321616(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr12:46321622-46321623(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr12:46321679-46321680(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr12:46321701-46321702(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr12:46321868-46321869(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr12:46321890-46321891(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr12:46321903-46321904(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr12:46322001-46322002(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085
chr12:46322161-46322162(-) m6A CDS       24284625//24981863//27773535//22608085
chr12:46322174-46322175(-) m6A CDS       24284625//24981863//27773535//22608085
chr12:46322200-46322201(-) m6A CDS       24284625//24981863//27773535//22608085
chr12:46322255-46322256(-) m6A CDS       24284625//24981863//27773535//22608085
chr12:46322316-46322317(-) m6A CDS       24284625//24981863//27773535//22608085
chr12:46322337-46322338(-) m6A CDS       24284625//24981863//27773535//22608085
chr12:46322376-46322377(-) m6A CDS       24284625//24981863//27773535//22608085
chr12:46322381-46322382(-) m6A CDS       24284625//24981863//27773535//22608085
chr12:46322458-46322459(-) m6A CDS       24284625//24981863//22608085
chr12:46322492-46322493(-) m6A CDS       24284625//24981863//22608085
chr12:46322544-46322545(-) m6A 5'UTR//CDS       24981863
chr12:46322582-46322583(-) m6A 5'UTR//CDS//exon       24981863
chr12:46357943-46357944(-) m1A 5'UTR//CDS//exon       26863410
chr12:46368044-46368045(-) m6A 5'UTR//intron       27773535
chr12:46368226-46368227(-) m6A 5'UTR//intron       27773535
chr12:46368281-46368282(-) m6A 5'UTR//intron       24981863//27773535//22608085
chr12:46368303-46368304(-) m6A 5'UTR//intron       24981863//27773535//22608085
chr12:46368353-46368354(-) m6A 5'UTR//intron       24981863//27773535//22608085
chr12:46368416-46368417(-) m6A 5'UTR//intron       24981863//27773535//22608085
chr12:46368447-46368448(-) m6A 5'UTR//intron       27773535//22608085
chr12:46368458-46368459(-) m6A 5'UTR//intron       27773535//27371828//22608085
chr12:46368497-46368498(-) m6A 5'UTR//intron       27773535//27371828//22608085
chr12:46368553-46368554(-) m6A 5'UTR//intron       27773535//22608085
chr12:46368588-46368589(-) m6A 5'UTR//intron       27773535//22608085
chr12:46368656-46368657(-) m6A 5'UTR//intron       27773535//22608085
chr12:46368799-46368800(-) m6A 5'UTR//intron       24981863//27773535//22608085
chr12:46368872-46368873(-) m6A 5'UTR//intron       24981863//27773535//22608085
chr12:46368943-46368944(-) m6A 5'UTR//intron       27773535//22608085
chr12:46368988-46368989(-) m6A 5'UTR//intron       27773535//22608085
chr12:46369022-46369023(-) m6A 5'UTR//intron       27773535//22608085
chr12:46369076-46369077(-) m6A 5'UTR//intron       27773535//22608085
chr12:46369128-46369129(-) m6A 5'UTR//intron       27773535//22608085
chr12:46369186-46369187(-) m6A 5'UTR//intron       27773535
chr12:46369223-46369224(-) m6A 5'UTR//intron       27773535
chr12:46384160-46384161(-) m6A 5'UTR//exon//intron       24981863//27371828
chr12:46384183-46384184(-) m6A 5'UTR//exon//intron       24981863//27371828
chr12:46384191-46384192(-) m6A 5'UTR//exon//intron       24284625//24981863//27371828
chr12:46384213-46384214(-) m6A 5'UTR//exon//intron       24284625//24981863//27371828
chr12:46384257-46384258(-) m6A 5'UTR//exon//intron       24284625//25456834//24981863//27371828//27773536
chr12:46384286-46384287(-) m6A 5'UTR//exon//intron       24284625//25456834//24981863//27371828//27773536
chr12:46385672-46385673(-) m6A 5'UTR       24284625//25456834//24981863//27371828//27773536
chr12:46385729-46385730(-) m6A 5'UTR       24284625//25456834//24981863
chr12:46385778-46385779(-) m6A 5'UTR       24284625//24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SCAF11
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Related Drug Information:


Resource Symbol Drug Name PubChem ID
RNAactDrug ebv-miR-BART1-5p
Panobinostat       6918837
Irinotecan       60838
Topotecan       60700
l-685,458       5479543
Palbociclib       5330286
Dovitinib       135398510
Crizotinib       11626560

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART1-5p
Interactor2: SCAF11

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA
Support Database RepTar//VmiReg

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