Basic Information:

  VIRBase ID:  

VHID00288462

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BHRF1-3:  MIMAT0000998          ZNF549:  NM_001199295     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BHRF1-3	ZNF549
miRBase Accession/Entrez ID	MIMAT0000998	256051
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ZNF549	chr19:58052034(+) A-I      3'UTR chr19:58052008(+) A-I      3'UTR chr19:58052021(+) A-I      3'UTR chr19:58052040(+) A-I      3'UTR chr19:58052007(+) A-I      3'UTR chr19:58051981(+) A-I      3'UTR chr19:58051976(+) A-I      3'UTR chr19:58051975(+) A-I      3'UTR chr19:58051972(+) A-I      3'UTR chr19:58051970(+) A-I      3'UTR chr19:58051974(+) A-I      3'UTR chr19:58051977(+) A-I      3'UTR chr19:58051978(+) A-I      3'UTR chr19:58051985(+) A-I      3'UTR chr19:58044374(+) A-I      intronic chr19:58048397(+) A-I      intronic chr19:58052110(+) A-I      3'UTR chr19:58051872(+) A-I      3'UTR

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ZNF549	chr19:58048615-58048616(+) m6A CDS//intron       22608085 chr19:58048648-58048649(+) m6A CDS//intron       22608085 chr19:58048715-58048716(+) m6A CDS//intron       24981863//22608085 chr19:58048744-58048745(+) m6A CDS//intron       24981863//22608085 chr19:58048761-58048762(+) m6A CDS//intron       24981863//22608085 chr19:58048826-58048827(+) m6A CDS//intron       24981863//22608085 chr19:58048832-58048833(+) m6A CDS//intron       24981863//22608085 chr19:58048845-58048846(+) m6A CDS//intron       24981863//22608085 chr19:58048907-58048908(+) m6A CDS//intron       24209618//24981863//22608085 chr19:58048975-58048976(+) m6A CDS//intron       24209618//24981863//22608085 chr19:58048989-58048990(+) m6A CDS//intron       24209618//24981863//22608085 chr19:58049017-58049018(+) m6A CDS//intron       24209618//24981863//22608085 chr19:58049141-58049142(+) m6A CDS//intron       24209618//25456834//24981863//22608085 chr19:58049163-58049164(+) m6A CDS//intron       24209618//25456834//24981863//22608085 chr19:58049173-58049174(+) m6A CDS//intron       24209618//24981863//22608085 chr19:58049232-58049233(+) m6A CDS//intron       24981863//22608085 chr19:58049334-58049335(+) m6A CDS//intron       24981863//22608085 chr19:58049344-58049345(+) m6A CDS//intron       24981863//22608085 chr19:58049403-58049404(+) m6A CDS//intron       22608085 chr19:58049574-58049575(+) m6A CDS//intron       24981863//22608085 chr19:58049664-58049665(+) m6A CDS//intron       24981863//22608085 chr19:58049826-58049827(+) m6A CDS//intron       24209618//25456834//24981863//22608085 chr19:58049916-58049917(+) m6A CDS//intron       25456834//24981863//22608085 chr19:58049949-58049950(+) m6A CDS//intron       24981863//22608085 chr19:58050000-58050001(+) m6A CDS//intron       24981863//22608085 chr19:58050072-58050073(+) m6A CDS//intron       25456834//24981863//22608085 chr19:58050164-58050165(+) m6A CDS//intron       24981863//22608085 chr19:58050333-58050334(+) m6A 3'UTR//intron       24981863//22608085 chr19:58050368-58050369(+) m6A 3'UTR//intron       24981863//22608085 chr19:58050489-58050490(+) m6A 3'UTR//intron       24981863//22608085 chr19:58050553-58050554(+) m6A 3'UTR//intron       24981863//22608085 chr19:58050627-58050628(+) m6A 3'UTR//intron       24981863//22608085 chr19:58050643-58050644(+) m6A 3'UTR//intron       24981863//22608085 chr19:58050648-58050649(+) m6A 3'UTR//intron       24981863//22608085 chr19:58051145-58051146(+) m6A 3'UTR//intron       24981863 chr19:58051346-58051347(+) m6A 3'UTR//intron       24981863 chr19:58051353-58051354(+) m6A 3'UTR//intron       24981863 chr19:58051413-58051414(+) m6A 3'UTR//intron       24981863//22608085 chr19:58051478-58051479(+) m6A 3'UTR//intron       24981863 chr19:58065978-58065979(+) m6A 3'UTR       25456834 chr19:58066009-58066010(+) m6A 3'UTR       25456834 chr19:58066030-58066031(+) m6A 3'UTR       25456834 chr19:58066053-58066054(+) m6A 3'UTR       25456834 chr19:58067386-58067387(+) m6A 3'UTR       25456834 chr19:58067432-58067433(+) m6A 3'UTR       25456834 chr19:58067463-58067464(+) m6A 3'UTR       25456834 chr19:58067473-58067474(+) m6A 3'UTR       25456834 chr19:58067494-58067495(+) m6A 3'UTR       25456834

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ZNF549	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BHRF1-3
Interactor2: ZNF549

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg