Basic Information:

  VIRBase ID:  

VHID00288378

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BHRF1-3:  MIMAT0000998          SIK1:  NM_173354     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BHRF1-3	SIK1
miRBase Accession/Entrez ID	MIMAT0000998	150094
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	DEE30//MSK//SIK//SIK-1//SIK1B//SNF1LK

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SIK1	chr21:44834548-44834549(-) m6A 3'UTR       26404942 chr21:44834808-44834809(-) m6A 3'UTR       26404942 chr21:44834876-44834877(-) m6A 3'UTR       24284625//26404942//27773535 chr21:44834932-44834933(-) m6A 3'UTR       24284625//26404942//27773535 chr21:44834956-44834957(-) m6A 3'UTR       24284625//26404942//27773535//22575960 chr21:44834984-44834985(-) m6A 3'UTR       24284625//26404942//27773535//22575960 chr21:44835195-44835196(-) m6A 3'UTR       24284625//26404942 chr21:44835210-44835211(-) m6A 3'UTR       24284625//26404942 chr21:44835248-44835249(-) m6A 3'UTR       24284625 chr21:44835330-44835331(-) m6A 3'UTR       22575960 chr21:44835676-44835677(-) m6A 3'UTR       26404942 chr21:44835730-44835731(-) m6A 3'UTR       26404942 chr21:44835793-44835794(-) m6A 3'UTR       26404942//22575960 chr21:44835924-44835925(-) m6A 3'UTR       26404942//27371828//22575960 chr21:44835962-44835963(-) m6A 3'UTR       26404942//27371828//22575960 chr21:44835987-44835988(-) m6A 3'UTR       26404942//27371828 chr21:44836012-44836013(-) m6A 3'UTR       26404942 chr21:44836048-44836049(-) m6A 3'UTR       26404942 chr21:44836057-44836058(-) m6A 3'UTR       26404942 chr21:44836141-44836142(-) m6A 3'UTR       26404942 chr21:44836148-44836149(-) m6A 3'UTR       26404942 chr21:44836356-44836357(-) m6A 3'UTR       24284625//24209618//26404942//27773535 chr21:44836413-44836414(-) Am 3'UTR       - chr21:44836425-44836426(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535 chr21:44836432-44836433(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535 chr21:44836535-44836536(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr21:44836557-44836558(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr21:44836596-44836597(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr21:44836664-44836665(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr21:44836679-44836680(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr21:44836787-44836788(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085 chr21:44836827-44836828(-) m6A CDS       24284625//24209618//24981863//27371828//22575960 chr21:44837590-44837591(-) m6A CDS       24284625//25456834//24981863//26404942//27371828//27773536//22575960 chr21:44837595-44837596(-) m6A CDS       24284625//25456834//24981863//26404942//27371828//27773536//22575960 chr21:44837612-44837613(-) m6A CDS       24284625//24981863//26404942//27371828//27773536//22575960 chr21:44837621-44837622(-) m6A CDS       24284625//24981863//26404942//27371828//27773536//22575960 chr21:44838156-44838157(-) m6A CDS       24284625//24981863//27371828//27773536//22575960 chr21:44838376-44838377(-) m6A CDS       24284625 chr21:44838986-44838987(-) m6A CDS       24284625//26404942//22575960 chr21:44839040-44839041(-) m6A CDS       24284625//22575960 chr21:44839260-44839261(-) m6A CDS       24284625//22575960 chr21:44839294-44839295(-) m6A CDS       24284625//22575960 chr21:44839754-44839755(-) m6A CDS       24284625//22575960 chr21:44840132-44840133(-) m6A CDS       24284625//26404942 chr21:44840145-44840146(-) m6A CDS       24284625//26404942 chr21:44840227-44840228(-) m6A CDS       24284625 chr21:44840300-44840301(-) m6A CDS       24284625 chr21:44840938-44840939(-) m6A CDS       24284625//22575960 chr21:44841224-44841225(-) Cm CDS//exon       - chr21:44845964-44845965(-) m6A CDS       22575960 chr21:44846029-44846030(-) m6A CDS       24284625//24209618//22575960

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SIK1	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BHRF1-3
Interactor2: SIK1

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg