Detail Information

Basic Information:


  VIRBase ID:  

VHID00288356

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BHRF1-3:           CWF19L2:      

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Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BHRF1-3 CWF19L2
miRBase
Accession/Entrez ID		 MIMAT0000998 143884
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CWF19L2
chr11:107256959(-) A-I      intronic
chr11:107256939(-) A-I      intronic
chr11:107256917(-) A-I      intronic
chr11:107256935(-) A-I      intronic
chr11:107256958(-) A-I      intronic
chr11:107256940(-) A-I      intronic
chr11:107256921(-) A-I      intronic
chr11:107283204(-) A-I      intronic
chr11:107286621(-) A-I      intronic
chr11:107283205(-) A-I      intronic
chr11:107207100(-) A-I      intronic
chr11:107283164(-) A-I      intronic
chr11:107286817(-) A-I      intronic
chr11:107210666(-) A-I      intronic
chr11:107207092(-) A-I      intronic
chr11:107259214(-) A-I      intronic
chr11:107206789(-) A-I      intronic
chr11:107206835(-) A-I      intronic
chr11:107207048(-) A-I      intronic
chr11:107207091(-) A-I      intronic
chr11:107207129(-) A-I      intronic
chr11:107208396(-) A-I      intronic
chr11:107208411(-) A-I      intronic
chr11:107210545(-) A-I      intronic
chr11:107257727(-) A-I      intronic
chr11:107210550(-) A-I      intronic
chr11:107210554(-) A-I      intronic
chr11:107283237(-) A-I      intronic
chr11:107210558(-) A-I      intronic
chr11:107256904(-) A-I      intronic
chr11:107256990(-) A-I      intronic
chr11:107206975(-) A-I      intronic
chr11:107257547(-) A-I      intronic
chr11:107257610(-) A-I      intronic
chr11:107286701(-) A-I      intronic
chr11:107207052(-) A-I      intronic
chr11:107257612(-) A-I      intronic
chr11:107257617(-) A-I      intronic
chr11:107283121(-) A-I      intronic
chr11:107257631(-) A-I      intronic
chr11:107257614(-) A-I      intronic
chr11:107208384(-) A-I      intronic
chr11:107206780(-) A-I      intronic
chr11:107283294(-) A-I      intronic
chr11:107286711(-) A-I      intronic
chr11:107257019(-) A-I      intronic
chr11:107206860(-) A-I      intronic
chr11:107283163(-) A-I      intronic
chr11:107256918(-) A-I      intronic
chr11:107259307(-) A-I      intronic
chr11:107283339(-) A-I      intronic
chr11:107257632(-) A-I      intronic
chr11:107210683(-) A-I      intronic
chr11:107207046(-) A-I      intronic
chr11:107206946(-) A-I      intronic
chr11:107257697(-) A-I      intronic
chr11:107207037(-) A-I      intronic
chr11:107206861(-) A-I      intronic
chr11:107206847(-) A-I      intronic
chr11:107256888(-) A-I      intronic
chr11:107207069(-) A-I      intronic
chr11:107256943(-) A-I      intronic
chr11:107213638(-) A-I      intronic
chr11:107259176(-) A-I      intronic
chr11:107283309(-) A-I      intronic
chr11:107257680(-) A-I      intronic
chr11:107283172(-) A-I      intronic
chr11:107206799(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CWF19L2
chr11:107213638(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CWF19L2
chr11:107197421-107197422(-) m6A 3'UTR       27773535
chr11:107197449-107197450(-) m6A 3'UTR       27773535//22608085
chr11:107197522-107197523(-) m6A 3'UTR       24981863//27773535//22608085
chr11:107197642-107197643(-) m6A 3'UTR//CDS       24981863//27773535//22608085
chr11:107197668-107197669(-) m6A 3'UTR//CDS       24981863//22608085
chr11:107197743-107197744(-) m6A 3'UTR//CDS       24981863//22608085
chr11:107197749-107197750(-) m6A 3'UTR//CDS       24981863//22608085
chr11:107224439-107224440(-) m6A CDS//exon//intron       27773535
chr11:107224449-107224450(-) m6A CDS//exon//intron       27773535
chr11:107260827-107260828(-) m6A CDS       27773535
chr11:107260843-107260844(-) m6A CDS       27773535
chr11:107263510-107263511(-) m6A CDS       27773535
chr11:107263556-107263557(-) m6A CDS       27773535
chr11:107263587-107263588(-) m6A CDS       27773535
chr11:107263613-107263614(-) m6A CDS       27773535
chr11:107274263-107274264(-) m6A intron       27773535
chr11:107274327-107274328(-) m6A intron       27773535
chr11:107274336-107274337(-) m6A intron       27773535
chr11:107274350-107274351(-) m6A intron       27773535
chr11:107274380-107274381(-) m6A intron       27773535
chr11:107274391-107274392(-) m6A intron       27773535
chr11:107274478-107274479(-) m6A intron       27773535
chr11:107274553-107274554(-) m6A intron       27773535
chr11:107286969-107286970(-) m6A CDS       27773535
chr11:107287012-107287013(-) m6A CDS       27773535
chr11:107288965-107288966(-) m6A CDS       27773535
chr11:107299556-107299557(-) m6A CDS       24981863//27773535
chr11:107299611-107299612(-) m6A CDS       24981863//27773535
chr11:107299631-107299632(-) m6A CDS       24981863//27773535//22608085
chr11:107299645-107299646(-) m6A CDS       24981863//27773535//22608085
chr11:107299670-107299671(-) m6A CDS       24981863//27773535//22608085
chr11:107299677-107299678(-) m6A CDS       24981863//27773535//22608085
chr11:107299725-107299726(-) m6A CDS       24284625//24981863//27773535//22608085
chr11:107299736-107299737(-) m6A CDS       24284625//24981863//27773535//22608085
chr11:107299796-107299797(-) m6A CDS       24284625//24981863//27773535//27371828//22608085
chr11:107299829-107299830(-) m6A CDS       24284625//24981863//27773535//27371828//22608085
chr11:107299847-107299848(-) m6A CDS       24284625//24981863//27773535//27371828//22608085
chr11:107299937-107299938(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr11:107300040-107300041(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr11:107300090-107300091(-) m6A CDS       24981863//27773535//22608085
chr11:107304381-107304382(-) m6A CDS       24981863//27773535//22608085
chr11:107304390-107304391(-) m6A CDS       24981863//27773535//22608085
chr11:107304401-107304402(-) m6A CDS       27773535
chr11:107304413-107304414(-) m6A CDS       27773535
chr11:107309841-107309842(-) m6A CDS       27773535
chr11:107309860-107309861(-) m6A CDS       27773535
chr11:107309903-107309904(-) m6A CDS       27773535
chr11:107312231-107312232(-) m6A CDS       27773535
chr11:107312244-107312245(-) m6A CDS       27773535
chr11:107312272-107312273(-) m6A CDS       27773535
chr11:107312308-107312309(-) m6A CDS       27773535
chr11:107313735-107313736(-) m6A CDS       27773535//22608085
chr11:107325200-107325201(-) m6A CDS       24981863//27773535//22608085
chr11:107325217-107325218(-) m6A CDS       24981863//27773535//22608085
chr11:107325266-107325267(-) m6A CDS       24981863//27773535//22608085
chr11:107325295-107325296(-) m6A CDS       24981863//27773535//22608085
chr11:107326403-107326404(-) m6A CDS       24981863//27773535//22608085
chr11:107326463-107326464(-) m6A CDS       24981863//27773535//27371828//22608085
chr11:107328473-107328474(-) m6A CDS       24981863//27773535//27371828//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate CWF19L2
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)|K562 cells     -
Membrane HCC cell line (HepG2)|K562 cells     -
Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BHRF1-3
Interactor2: CWF19L2

Evidence Support:


Prediction-Evidence miRanda//PITA//Targetscan
Support Database VmiReg

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