Basic Information:

  VIRBase ID:  

VHID00288291

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BHRF1-3:  MIMAT0000998          PTPMT1:  NM_001143984     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BHRF1-3	PTPMT1
miRBase Accession/Entrez ID	MIMAT0000998	114971
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	DUSP23//MOSP//PLIP//PNAS-129

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PTPMT1	chr11:47594159(+) A-I      3'UTR chr11:47594165(+) A-I      3'UTR chr11:47594126(+) A-I      3'UTR chr11:47594180(+) A-I      3'UTR chr11:47594175(+) A-I      3'UTR chr11:47594166(+) A-I      3'UTR chr11:47594113(+) A-I      3'UTR chr11:47594149(+) A-I      3'UTR chr11:47594116(+) A-I      3'UTR chr11:47594119(+) A-I      3'UTR chr11:47594136(+) A-I      3'UTR chr11:47590465(+) A-I      intronic chr11:47590683(+) A-I      intronic chr11:47588847(+) A-I      intronic chr11:47591580(+) A-I      intronic chr11:47590344(+) A-I      intronic chr11:47590723(+) A-I      intronic chr11:47590728(+) A-I      intronic chr11:47589972(+) A-I      intronic chr11:47589182(+) A-I      intronic chr11:47590751(+) A-I      intronic chr11:47589286(+) A-I      intronic chr11:47590823(+) A-I      intronic chr11:47587873(+) A-I      intronic chr11:47587879(+) A-I      intronic chr11:47588049(+) A-I      intronic chr11:47590752(+) A-I      intronic chr11:47589176(+) A-I      intronic chr11:47590408(+) A-I      intronic chr11:47589211(+) A-I      intronic chr11:47589253(+) A-I      intronic chr11:47591482(+) A-I      intronic chr11:47589375(+) A-I      intronic chr11:47589978(+) A-I      intronic chr11:47590107(+) A-I      intronic chr11:47590176(+) A-I      intronic chr11:47590346(+) A-I      intronic chr11:47590360(+) A-I      intronic chr11:47590417(+) A-I      intronic chr11:47590423(+) A-I      intronic chr11:47590463(+) A-I      intronic chr11:47589251(+) A-I      intronic chr11:47588031(+) A-I      intronic chr11:47589212(+) A-I      intronic chr11:47589746(+) A-I      intronic chr11:47590448(+) A-I      intronic chr11:47589533(+) A-I      intronic chr11:47589177(+) A-I      intronic chr11:47590382(+) A-I      intronic chr11:47589973(+) A-I      intronic chr11:47590504(+) A-I      intronic chr11:47588811(+) A-I      intronic chr11:47590046(+) A-I      intronic chr11:47589374(+) A-I      intronic chr11:47590372(+) A-I      intronic chr11:47590300(+) A-I      intronic chr11:47587936(+) A-I      intronic chr11:47589385(+) A-I      intronic chr11:47588999(+) A-I      intronic chr11:47590342(+) A-I      intronic chr11:47591668(+) A-I      intronic chr11:47588674(+) A-I      intronic chr11:47590347(+) A-I      intronic chr11:47589373(+) A-I      intronic chr11:47590791(+) A-I      intronic chr11:47590262(+) A-I      intronic chr11:47589293(+) A-I      intronic chr11:47590343(+) A-I      intronic chr11:47588893(+) A-I      intronic chr11:47590817(+) A-I      intronic chr11:47590517(+) A-I      intronic chr11:47591519(+) A-I      intronic chr11:47590113(+) A-I      intronic chr11:47587924(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PTPMT1	chr11:47587129-47587130(+) m6A 5'UTR       27773536//22608085 chr11:47587280-47587281(+) m6A CDS       24981863//22575960//22608085 chr11:47593157-47593158(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr11:47593175-47593176(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr11:47593200-47593201(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr11:47593207-47593208(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr11:47593223-47593224(+) Cm 3'UTR//exon       - chr11:47593227-47593228(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr11:47593246-47593247(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr11:47593267-47593268(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr11:47593639-47593640(+) m6A 3'UTR//exon       22608085 chr11:47593649-47593650(+) m6A 3'UTR//exon       22608085 chr11:47594267-47594268(+) m6A exon       27773535 chr11:47594605-47594606(+) m6A exon       24284625//24209618 chr11:47594741-47594742(+) m6A exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PTPMT1	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol K562 cells     - Exosome Blood     - Nucleoplasm K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BHRF1-3
Interactor2: PTPMT1

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg