Basic Information:

  VIRBase ID:  

VHID00288262

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BHRF1-3:  MIMAT0000998          CDHR1:  NM_033100     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BHRF1-3	CDHR1
miRBase Accession/Entrez ID	MIMAT0000998	92211
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CORD15//PCDH21//PRCAD//RP65

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CDHR1	chr10:85963257(+) A-I      intronic chr10:85969855(+) A-I      intronic chr10:85970103(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CDHR1	chr10:85974112-85974113(+) m6A CDS//exon//intron       25456834//24981863 chr10:85974126-85974127(+) m6A CDS//exon//intron       25456834//24981863 chr10:85974224-85974225(+) m6A CDS//exon//intron       25456834//24981863 chr10:85974280-85974281(+) m6A CDS//exon//intron       25456834//24981863 chr10:85974287-85974288(+) m6A CDS//exon//intron       25456834//24981863 chr10:85974438-85974439(+) m6A 3'UTR//exon//intron       24981863 chr10:85974875-85974876(+) m6A 3'UTR//exon//intron       25456834//24981863//22608085 chr10:85974933-85974934(+) m6A 3'UTR//exon//intron       25456834//24981863//22608085 chr10:85974949-85974950(+) m6A 3'UTR//exon//intron       25456834//24981863//22608085 chr10:85974998-85974999(+) m6A 3'UTR//exon//intron       25456834//24981863//22608085 chr10:85975005-85975006(+) m6A 3'UTR//exon//intron       25456834//24981863//22608085 chr10:85975026-85975027(+) m6A 3'UTR//exon//intron       25456834//24981863//22608085 chr10:85975033-85975034(+) m6A 3'UTR//exon//intron       25456834//24981863//22608085 chr10:85975089-85975090(+) m6A 3'UTR//exon//intron       25456834//24981863//22608085 chr10:85975204-85975205(+) m6A 3'UTR//exon//intron       25456834//24981863//22608085 chr10:85975249-85975250(+) m6A 3'UTR//exon//intron       25456834//24981863//22608085 chr10:85975803-85975804(+) m6A 3'UTR//exon//intron       22608085 chr10:85976089-85976090(+) m6A 3'UTR//exon//intron       25456834//24981863//22608085 chr10:85976110-85976111(+) m6A 3'UTR//exon//intron       25456834//24981863//22608085 chr10:85976133-85976134(+) m6A 3'UTR//exon//intron       25456834//24981863//22608085 chr10:85976175-85976176(+) m6A 3'UTR//exon//intron       25456834//24981863//22608085 chr10:85976332-85976333(+) m6A 3'UTR//exon//intron       22608085 chr10:85976468-85976469(+) m6A 3'UTR//exon//intron       25456834//24981863//22608085 chr10:85976476-85976477(+) m6A 3'UTR//exon//intron       25456834//24981863//22608085 chr10:85976500-85976501(+) m6A 3'UTR//exon//intron       25456834//24981863//22608085 chr10:85976513-85976514(+) m6A 3'UTR//exon//intron       25456834//24981863//22608085 chr10:85976518-85976519(+) m6A 3'UTR//exon//intron       25456834//24981863//22608085 chr10:85976553-85976554(+) m6A 3'UTR//exon//intron       25456834//24981863 chr10:85976669-85976670(+) m6A 3'UTR//exon//intron       25456834 chr10:85976684-85976685(+) m6A 3'UTR//exon//intron       25456834 chr10:85976724-85976725(+) m6A 3'UTR//exon//intron       25456834 chr10:85976743-85976744(+) m6A 3'UTR//exon//intron       25456834 chr10:85976755-85976756(+) m6A 3'UTR//exon//intron       25456834 chr10:85976761-85976762(+) m6A 3'UTR//exon//intron       25456834 chr10:85976785-85976786(+) m6A 3'UTR//exon//intron       25456834//24981863 chr10:85976858-85976859(+) m6A 3'UTR//exon//intron       25456834//24981863 chr10:85976896-85976897(+) m6A 3'UTR//exon//intron       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CDHR1	Cytosol K562 cells     - Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BHRF1-3
Interactor2: CDHR1

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg