Detail Information

Basic Information:


  VIRBase ID:  

VHID00288179

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BHRF1-3:           TMTC1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BHRF1-3 TMTC1
miRBase
Accession/Entrez ID		 MIMAT0000998 83857
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - ARG99//OLF//TMTC1A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TMTC1
chr12:29893650(-) A-I      intronic
chr12:29785544(-) A-I      intronic
chr12:29785548(-) A-I      intronic
chr12:29785556(-) A-I      intronic
chr12:29785562(-) A-I      intronic
chr12:29785591(-) A-I      intronic
chr12:29893715(-) A-I      intronic
chr12:29785592(-) A-I      intronic
chr12:29893717(-) A-I      intronic
chr12:29785594(-) A-I      intronic
chr12:29856959(-) A-I      intronic
chr12:29856960(-) A-I      intronic
chr12:29785563(-) A-I      intronic
chr12:29856999(-) A-I      intronic
chr12:29856978(-) A-I      intronic
chr12:29782139(-) A-I      intronic
chr12:29782142(-) A-I      intronic
chr12:29782192(-) A-I      intronic
chr12:29847797(-) A-I      intronic
chr12:29782197(-) A-I      intronic
chr12:29810944(-) A-I      intronic
chr12:29809373(-) A-I      intronic
chr12:29808109(-) A-I      intronic
chr12:29808086(-) A-I      intronic
chr12:29803231(-) A-I      intronic
chr12:29803222(-) A-I      intronic
chr12:29803123(-) A-I      intronic
chr12:29782249(-) A-I      intronic
chr12:29782085(-) A-I      intronic
chr12:29782083(-) A-I      intronic
chr12:29782063(-) A-I      intronic
chr12:29781687(-) A-I      intronic
chr12:29776699(-) A-I      intronic
chr12:29776583(-) A-I      intronic
chr12:29710452(-) A-I      intronic
chr12:29707772(-) A-I      intronic
chr12:29697174(-) A-I      intronic
chr12:29893686(-) A-I      intronic
chr12:29893666(-) A-I      intronic
chr12:29880438(-) A-I      intronic
chr12:29878088(-) A-I      intronic
chr12:29878079(-) A-I      intronic
chr12:29869244(-) A-I      intronic
chr12:29782105(-) A-I      intronic
chr12:29869228(-) A-I      intronic
chr12:29869227(-) A-I      intronic
chr12:29869174(-) A-I      intronic
chr12:29864192(-) A-I      intronic
chr12:29864144(-) A-I      intronic
chr12:29864112(-) A-I      intronic
chr12:29864054(-) A-I      intronic
chr12:29864044(-) A-I      intronic
chr12:29863976(-) A-I      intronic
chr12:29848364(-) A-I      intronic
chr12:29833910(-) A-I      intronic
chr12:29833908(-) A-I      intronic
chr12:29833904(-) A-I      intronic
chr12:29826831(-) A-I      intronic
chr12:29826821(-) A-I      intronic
chr12:29826814(-) A-I      intronic
chr12:29826804(-) A-I      intronic
chr12:29821496(-) A-I      intronic
chr12:29816939(-) A-I      intronic
chr12:29816606(-) A-I      intronic
chr12:29816587(-) A-I      intronic
chr12:29810963(-) A-I      intronic
chr12:29740466(-) A-I      intronic
chr12:29881819(-) A-I      intronic
chr12:29754929(-) A-I      intronic
chr12:29898491(-) A-I      intronic
chr12:29821631(-) A-I      intronic
chr12:29852638(-) A-I      intronic
chr12:29823650(-) A-I      intronic
chr12:29823605(-) A-I      intronic
chr12:29878278(-) A-I      intronic
chr12:29694720(-) A-I      intronic
chr12:29878404(-) A-I      intronic
chr12:29826682(-) A-I      intronic
chr12:29898471(-) A-I      intronic
chr12:29821613(-) A-I      intronic
chr12:29853336(-) A-I      intronic
chr12:29821531(-) A-I      intronic
chr12:29853408(-) A-I      intronic
chr12:29855861(-) A-I      intronic
chr12:29781655(-) A-I      intronic
chr12:29821661(-) A-I      intronic
chr12:29815328(-) A-I      intronic
chr12:29848336(-) A-I      intronic
chr12:29884157(-) A-I      intronic
chr12:29897957(-) A-I      intronic
chr12:29821554(-) A-I      intronic
chr12:29821564(-) A-I      intronic
chr12:29803146(-) A-I      intronic
chr12:29898302(-) A-I      intronic
chr12:29821667(-) A-I      intronic
chr12:29803197(-) A-I      intronic
chr12:29694729(-) A-I      intronic
chr12:29782191(-) A-I      intronic
chr12:29878115(-) A-I      intronic
chr12:29880600(-) A-I      intronic
chr12:29821650(-) A-I      intronic
chr12:29707770(-) A-I      intronic
chr12:29821612(-) A-I      intronic
chr12:29848337(-) A-I      intronic
chr12:29881747(-) A-I      intronic
chr12:29898384(-) A-I      intronic
chr12:29823627(-) A-I      intronic
chr12:29803221(-) A-I      intronic
chr12:29674494(-) A-I      intronic
chr12:29698461(-) A-I      intronic
chr12:29881726(-) A-I      intronic
chr12:29852848(-) A-I      intronic
chr12:29821683(-) A-I      intronic
chr12:29869068(-) A-I      intronic
chr12:29864056(-) A-I      intronic
chr12:29875670(-) A-I      intronic
chr12:29852658(-) A-I      intronic
chr12:29853262(-) A-I      intronic
chr12:29847625(-) A-I      intronic
chr12:29821558(-) A-I      intronic
chr12:29881809(-) A-I      intronic
chr12:29823644(-) A-I      intronic
chr12:29821526(-) A-I      intronic
chr12:29789975(-) A-I      intronic
chr12:29819268(-) A-I      intronic
chr12:29693765(-) A-I      intronic
chr12:29782251(-) A-I      intronic
chr12:29826885(-) A-I      intronic
chr12:29853335(-) A-I      intronic
chr12:29816454(-) A-I      intronic
chr12:29869080(-) A-I      intronic
chr12:29816931(-) A-I      intronic
chr12:29754933(-) A-I      intronic
chr12:29890195(-) A-I      intronic
chr12:29853120(-) A-I      intronic
chr12:29826789(-) A-I      intronic
chr12:29852793(-) A-I      intronic
chr12:29823641(-) A-I      intronic
chr12:29816723(-) A-I      intronic
chr12:29823589(-) A-I      intronic
chr12:29821505(-) A-I      intronic
chr12:29878418(-) A-I      intronic
chr12:29898311(-) A-I      intronic
chr12:29698451(-) A-I      intronic
chr12:29819150(-) A-I      intronic
chr12:29821666(-) A-I      intronic
chr12:29803182(-) A-I      intronic
chr12:29708208(-) A-I      intronic
chr12:29823674(-) A-I      intronic
chr12:29819350(-) A-I      intronic
chr12:29823651(-) A-I      intronic
chr12:29821562(-) A-I      intronic
chr12:29821490(-) A-I      intronic
chr12:29847836(-) A-I      intronic
chr12:29821607(-) A-I      intronic
chr12:29808048(-) A-I      intronic
chr12:29822568(-) A-I      intronic
chr12:29710610(-) A-I      intronic
chr12:29782198(-) A-I      intronic
chr12:29864026(-) A-I      intronic
chr12:29816504(-) A-I      intronic
chr12:29823670(-) A-I      intronic
chr12:29881848(-) A-I      intronic
chr12:29864139(-) A-I      intronic
chr12:29815500(-) A-I      intronic
chr12:29848404(-) A-I      intronic
chr12:29811018(-) A-I      intronic
chr12:29878062(-) A-I      intronic
chr12:29878032(-) A-I      intronic
chr12:29852659(-) A-I      intronic
chr12:29852847(-) A-I      intronic
chr12:29808078(-) A-I      intronic
chr12:29821587(-) A-I      intronic
chr12:29815499(-) A-I      intronic
chr12:29710495(-) A-I      intronic
chr12:29789924(-) A-I      intronic
chr12:29897956(-) A-I      intronic
chr12:29821645(-) A-I      intronic
chr12:29821621(-) A-I      intronic
chr12:29930166(-) A-I      intronic
chr12:29781723(-) A-I      intronic
chr12:29821597(-) A-I      intronic
chr12:29656879(-) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED TMTC1
chr12:29821490(-) A-I intron -    15342557
chr12:29821505(-) A-I intron -    15342557
chr12:29821526(-) A-I intron -    15342557
chr12:29821531(-) A-I intron -    15342557
chr12:29821550(-) A-I intron -    15342557
chr12:29821554(-) A-I intron -    15342557
chr12:29821558(-) A-I intron -    15342557
chr12:29821564(-) A-I intron -    15342557
chr12:29821587(-) A-I intron -    15342557
chr12:29821590(-) A-I intron -    15342557
chr12:29821597(-) A-I intron -    15342557
chr12:29821607(-) A-I intron -    15342557
chr12:29821612(-) A-I intron -    15342557
chr12:29821613(-) A-I intron -    15342557
chr12:29821621(-) A-I intron -    15342557
chr12:29821631(-) A-I intron -    15342557
chr12:29821644(-) A-I intron -    15342557
chr12:29821645(-) A-I intron -    15342557
chr12:29821650(-) A-I intron -    15342557
chr12:29821661(-) A-I intron -    15342557
chr12:29821666(-) A-I intron -    15342557
chr12:29821667(-) A-I intron -    15342557
chr12:29821683(-) A-I intron -    15342557
chr12:29822568(-) A-I intron -    15342557
chr12:29823589(-) A-I intron -    15342557
chr12:29823605(-) A-I intron -    15342557
chr12:29823627(-) A-I intron -    15342557
chr12:29823641(-) A-I intron -    15342557
chr12:29823644(-) A-I intron -    15342557
chr12:29823650(-) A-I intron -    15342557
chr12:29823651(-) A-I intron -    15342557
chr12:29823670(-) A-I intron -    15342557
chr12:29823674(-) A-I intron -    15342557
chr12:29864056(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TMTC1
chr12:29657898-29657899(-) m6A 3'UTR       27773535
chr12:29659446-29659447(-) m6A 3'UTR//exon       27773535//22608085
chr12:29659470-29659471(-) m6A 3'UTR//exon       27773535//22608085
chr12:29659578-29659579(-) m6A 3'UTR//exon       24284625//25456834//24981863//27773535//22575960//22608085
chr12:29659585-29659586(-) m6A 3'UTR//exon       24284625//25456834//24981863//27773535//22575960//22608085
chr12:29659612-29659613(-) m6A 3'UTR//exon       24284625//25456834//24981863//28052920//27773535//22575960//22608085
chr12:29659640-29659641(-) m6A 3'UTR//exon       24284625//25456834//24981863//28052920//27773535//22575960//22608085
chr12:29659783-29659784(-) m6A CDS//exon       24284625//27773535//22608085
chr12:29659856-29659857(-) m6A CDS//exon       24284625//27773535//22608085
chr12:29659863-29659864(-) m6A CDS//exon       24284625//27773535//22608085
chr12:29665000-29665001(-) m6A CDS//exon       24284625
chr12:29667474-29667475(-) m6A CDS//exon       27773535
chr12:29667493-29667494(-) m6A CDS//exon       27773535
chr12:29667501-29667502(-) m6A CDS//exon       27773535
chr12:29667520-29667521(-) m6A CDS//exon       27773535
chr12:29669291-29669292(-) m6A CDS//exon       27773535
chr12:29709892-29709893(-) m6A CDS//exon       27773535
chr12:29721734-29721735(-) m6A 3'UTR//intron       27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate TMTC1
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BHRF1-3
Interactor2: TMTC1

Evidence Support:


Prediction-Evidence miRanda//PITA//Targetscan
Support Database VmiReg

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