Detail Information

Basic Information:


  VIRBase ID:  

VHID00287924

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BHRF1-3:           HEATR1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BHRF1-3 HEATR1
miRBase
Accession/Entrez ID		 MIMAT0000998 55127
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - BAP28//UTP10

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR HEATR1
chr1:236732624(-) A-I      intronic
chr1:236732568(-) A-I      intronic
chr1:236732560(-) A-I      intronic
chr1:236714105(-) A-I      3'UTR
chr1:236714087(-) A-I      3'UTR
chr1:236714083(-) A-I      3'UTR
chr1:236714080(-) A-I      3'UTR
chr1:236714072(-) A-I      3'UTR
chr1:236714061(-) A-I      3'UTR
chr1:236714058(-) A-I      3'UTR
chr1:236714057(-) A-I      3'UTR
chr1:236727318(-) A-I      intronic
chr1:236714104(-) A-I      3'UTR
chr1:236763632(-) A-I      intronic
chr1:236763591(-) A-I      intronic
chr1:236763583(-) A-I      intronic
chr1:236763575(-) A-I      intronic
chr1:236764655(-) A-I      intronic
chr1:236760378(-) A-I      intronic
chr1:236726697(-) A-I      intronic
chr1:236763864(-) A-I      intronic
chr1:236763459(-) A-I      intronic
chr1:236765395(-) A-I      intronic
chr1:236765353(-) A-I      intronic
chr1:236764675(-) A-I      intronic
chr1:236726720(-) A-I      intronic
chr1:236764652(-) A-I      intronic
chr1:236765406(-) A-I      intronic
chr1:236766008(-) A-I      intronic
chr1:236764614(-) A-I      intronic
chr1:236764093(-) A-I      intronic
chr1:236766033(-) A-I      intronic
chr1:236763559(-) A-I      intronic
chr1:236763460(-) A-I      intronic
chr1:236727296(-) A-I      intronic
chr1:236727299(-) A-I      intronic
chr1:236730480(-) A-I      intronic
chr1:236726608(-) A-I      intronic
chr1:236732547(-) A-I      intronic
chr1:236732552(-) A-I      intronic
chr1:236732604(-) A-I      intronic
chr1:236732538(-) A-I      intronic
chr1:236766116(-) A-I      intronic
chr1:236732620(-) A-I      intronic
chr1:236732701(-) A-I      intronic
chr1:236766124(-) A-I      intronic
chr1:236763317(-) A-I      intronic
chr1:236726625(-) A-I      intronic
chr1:236764926(-) A-I      intronic
chr1:236763677(-) A-I      intronic
chr1:236760394(-) A-I      intronic
chr1:236726678(-) A-I      intronic
chr1:236726844(-) A-I      intronic
chr1:236732584(-) A-I      intronic
chr1:236727386(-) A-I      intronic
chr1:236746955(-) A-I      intronic
chr1:236764038(-) A-I      intronic
chr1:236732644(-) A-I      intronic
chr1:236732614(-) A-I      intronic
chr1:236763634(-) A-I      intronic
chr1:236765357(-) A-I      intronic
chr1:236764039(-) A-I      intronic
chr1:236764639(-) A-I      intronic
chr1:236765363(-) A-I      intronic
chr1:236727243(-) A-I      intronic
chr1:236727377(-) A-I      intronic
chr1:236763290(-) A-I      intronic
chr1:236763655(-) A-I      intronic
chr1:236763840(-) A-I      intronic
chr1:236732600(-) A-I      intronic
chr1:236765317(-) A-I      intronic
chr1:236760373(-) A-I      intronic
chr1:236732702(-) A-I      intronic
chr1:236764720(-) A-I      intronic
chr1:236726763(-) A-I      intronic
chr1:236753639(-) A-I      intronic
chr1:236764685(-) A-I      intronic
chr1:236764722(-) A-I      intronic
chr1:236764691(-) A-I      intronic
chr1:236765431(-) A-I      intronic
chr1:236765352(-) A-I      intronic
chr1:236727404(-) A-I      intronic
chr1:236766021(-) A-I      intronic
chr1:236732640(-) A-I      intronic
chr1:236763673(-) A-I      intronic
chr1:236765433(-) A-I      intronic
chr1:236764711(-) A-I      intronic
chr1:236766037(-) A-I      intronic
chr1:236763525(-) A-I      intronic
chr1:236764081(-) A-I      intronic
chr1:236763565(-) A-I      intronic
chr1:236727385(-) A-I      intronic
chr1:236727335(-) A-I      intronic
chr1:236764048(-) A-I      intronic
chr1:236746951(-) A-I      intronic
chr1:236763975(-) A-I      intronic
chr1:236763704(-) A-I      intronic
chr1:236763439(-) A-I      intronic
chr1:236763538(-) A-I      intronic
chr1:236727306(-) A-I      intronic
chr1:236765356(-) A-I      intronic
chr1:236732720(-) A-I      intronic
chr1:236763969(-) A-I      intronic
chr1:236763928(-) A-I      intronic
chr1:236764742(-) A-I      intronic
chr1:236764604(-) A-I      intronic
chr1:236727310(-) A-I      intronic
chr1:236765980(-) A-I      intronic
chr1:236765311(-) A-I      intronic
chr1:236766129(-) A-I      3'UTR
chr1:236764619(-) A-I      intronic
chr1:236764644(-) A-I      intronic
chr1:236758169(-) A-I      intronic
chr1:236732627(-) A-I      intronic
chr1:236764934(-) A-I      intronic
chr1:236764658(-) A-I      intronic
chr1:236727331(-) A-I      intronic
chr1:236726649(-) A-I      intronic
chr1:236763947(-) A-I      intronic
chr1:236763375(-) A-I      intronic
chr1:236766059(-) A-I      intronic
chr1:236764724(-) A-I      intronic
chr1:236763555(-) A-I      intronic
chr1:236726845(-) A-I      intronic
chr1:236765301(-) A-I      intronic
chr1:236764717(-) A-I      intronic
chr1:236763942(-) A-I      intronic
chr1:236766102(-) A-I      intronic
chr1:236726746(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED HEATR1
chr1:236763439(-) A-I intron -    15342557
chr1:236763525(-) A-I intron -    15342557
chr1:236763538(-) A-I intron -    15342557
chr1:236763555(-) A-I intron -    15342557
chr1:236763565(-) A-I intron -    15342557
chr1:236766137(-) A-I intron -    15342557
chr1:236766141(-) A-I intron -    15342557
chr1:236766148(-) A-I intron -    15342557
chr1:236766217(-) A-I intron -    15342557
chr1:236732627(-) A-I intron -    22327324
chr1:236727377(-) A-I intron -    21960545
chr1:236727385(-) A-I intron -    21960545
chr1:236732702(-) A-I intron -    21960545
chr1:236726625(-) A-G intron -    22484847
chr1:236727306(-) A-G intron -    22484847
chr1:236727310(-) A-G intron -    22484847
chr1:236727377(-) A-G intron -    22484847
chr1:236727385(-) A-G intron -    22484847
chr1:236727386(-) A-G intron -    22484847
chr1:236732600(-) A-G intron -    22484847
chr1:236732614(-) A-G intron -    22484847
chr1:236732627(-) A-G intron -    22484847
chr1:236732644(-) A-G intron -    22484847
chr1:236732702(-) A-G intron -    22484847
chr1:236760559(-) A-T intron -    22484847
chr1:236763290(-) A-G intron -    22484847
chr1:236763673(-) A-G intron -    22484847
chr1:236763928(-) A-G intron -    22484847
chr1:236764038(-) A-G intron -    22484847
chr1:236764039(-) A-G intron -    22484847
chr1:236764048(-) A-G intron -    22484847
chr1:236764604(-) A-G intron -    22484847
chr1:236764619(-) A-G intron -    22484847
chr1:236764639(-) A-G intron -    22484847
chr1:236764644(-) A-G intron -    22484847
chr1:236764658(-) A-G intron -    22484847
chr1:236764685(-) A-G intron -    22484847
chr1:236764691(-) A-G intron -    22484847
chr1:236764711(-) A-G intron -    22484847
chr1:236764724(-) A-G intron -    22484847
chr1:236764934(-) A-G intron -    22484847
chr1:236764963(-) G-T intron -    22484847
chr1:236764965(-) T-G intron -    22484847
chr1:236765311(-) A-G intron -    22484847
chr1:236765317(-) A-G intron -    22484847
chr1:236765352(-) A-G intron -    22484847
chr1:236765357(-) A-G intron -    22484847
chr1:236765363(-) A-G intron -    22484847
chr1:236766037(-) A-G intron -    22484847
chr1:236766215(-) A-G intron -    22484847
chr1:236766217(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase HEATR1
chr1:236712439-236712440(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr1:236712444-236712445(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr1:236712490-236712491(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr1:236712572-236712573(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr1:236712618-236712619(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr1:236712673-236712674(-) m6A 3'UTR       27773535//22608085
chr1:236713563-236713564(-) m6A 3'UTR       22608085
chr1:236713704-236713705(-) m6A 3'UTR       22608085
chr1:236713904-236713905(-) m6A 3'UTR       22608085
chr1:236713945-236713946(-) m6A 3'UTR       27773535//22608085
chr1:236713963-236713964(-) m6A 3'UTR       27773535
chr1:236714199-236714200(-) m6A 3'UTR       24981863//27773535
chr1:236714236-236714237(-) m6A CDS       24981863//27773535
chr1:236714254-236714255(-) m6A CDS       24981863//27773535
chr1:236714270-236714271(-) m6A CDS       24981863//27773535
chr1:236715362-236715363(-) m6A CDS       26404942
chr1:236722299-236722300(-) m6A CDS       27773535
chr1:236722343-236722344(-) m6A CDS       27773535
chr1:236737624-236737625(-) m6A CDS//exon       26404942
chr1:236738005-236738006(-) m6A CDS//exon//intron       26404942
chr1:236738157-236738158(-) Am CDS//intron       -
chr1:236767412-236767413(-) m6A 5'UTR       24981863//22575960

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate HEATR1
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Membrane HCC cell line (HepG2)|K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BHRF1-3
Interactor2: HEATR1

Evidence Support:


Prediction-Evidence miRanda//PITA
Support Database VmiReg

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