Detail Information

Basic Information:


  VIRBase ID:  

VHID00287834

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BHRF1-3:           SENP1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BHRF1-3 SENP1
miRBase
Accession/Entrez ID		 MIMAT0000998 29843
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - SuPr-2

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SENP1
chr12:48485041(-) A-I      intronic
chr12:48488363(-) A-I      intronic
chr12:48488347(-) A-I      intronic
chr12:48487940(-) A-I      intronic
chr12:48487654(-) A-I      intronic
chr12:48487334(-) A-I      intronic
chr12:48448534(-) A-I      intronic
chr12:48487333(-) A-I      intronic
chr12:48487290(-) A-I      intronic
chr12:48487159(-) A-I      intronic
chr12:48485559(-) A-I      intronic
chr12:48485538(-) A-I      intronic
chr12:48485509(-) A-I      intronic
chr12:48485069(-) A-I      intronic
chr12:48485066(-) A-I      intronic
chr12:48476861(-) A-I      intronic
chr12:48468771(-) A-I      intronic
chr12:48461804(-) A-I      intronic
chr12:48461512(-) A-I      intronic
chr12:48485084(-) A-I      intronic
chr12:48497894(-) A-I      intronic
chr12:48492202(-) A-I      intronic
chr12:48488377(-) A-I      intronic
chr12:48487914(-) A-I      intronic
chr12:48485121(-) A-I      intronic
chr12:48488441(-) A-I      intronic
chr12:48488341(-) A-I      intronic
chr12:48451216(-) A-I      intronic
chr12:48487924(-) A-I      intronic
chr12:48448316(-) A-I      intronic
chr12:48487339(-) A-I      intronic
chr12:48487205(-) A-I      intronic
chr12:48485696(-) A-I      intronic
chr12:48490691(-) A-I      intronic
chr12:48464645(-) A-I      intronic
chr12:48460309(-) A-I      intronic
chr12:48481974(-) A-I      intronic
chr12:48468779(-) A-I      intronic
chr12:48487318(-) A-I      intronic
chr12:48461498(-) A-I      intronic
chr12:48460472(-) A-I      intronic
chr12:48488087(-) A-I      intronic
chr12:48485582(-) A-I      intronic
chr12:48487294(-) A-I      intronic
chr12:48489219(-) A-I      intronic
chr12:48487195(-) A-I      intronic
chr12:48447039(-) A-I      intronic
chr12:48475432(-) A-I      intronic
chr12:48451675(-) A-I      intronic
chr12:48489109(-) A-I      intronic
chr12:48487187(-) A-I      intronic
chr12:48470564(-) A-I      intronic
chr12:48468887(-) A-I      intronic
chr12:48487204(-) A-I      intronic
chr12:48455288(-) A-I      intronic
chr12:48448314(-) A-I      intronic
chr12:48485667(-) A-I      intronic
chr12:48476963(-) A-I      intronic
chr12:48487175(-) A-I      intronic
chr12:48460296(-) A-I      intronic
chr12:48487955(-) A-I      intronic
chr12:48479422(-) A-I      intronic
chr12:48454425(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SENP1
chr12:48448314(-) A-G intron -    22484847
chr12:48468779(-) A-G intron -    22484847
chr12:48476963(-) A-G intron -    22484847
chr12:48487175(-) A-G intron -    22484847
chr12:48487187(-) A-G intron -    22484847
chr12:48487204(-) A-G intron -    22484847
chr12:48487205(-) A-G intron -    22484847
chr12:48487294(-) A-G intron -    22484847
chr12:48487318(-) A-G intron -    22484847
chr12:48487914(-) A-G intron -    22484847
chr12:48488087(-) A-G intron -    22484847
chr12:48488441(-) A-G intron -    22484847
chr12:48489219(-) A-G intron -    22484847
chr12:48489318(-) G-T intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SENP1
chr12:48437188-48437189(-) m6A 3'UTR       24981863
chr12:48437203-48437204(-) m6A 3'UTR       24981863
chr12:48437872-48437873(-) m6A 3'UTR       24981863
chr12:48437895-48437896(-) m6A 3'UTR       24981863
chr12:48437968-48437969(-) m6A 3'UTR       24981863
chr12:48438002-48438003(-) m6A 3'UTR       24981863
chr12:48438362-48438363(-) m6A 3'UTR       27773535
chr12:48438440-48438441(-) m6A 3'UTR       27773535
chr12:48438547-48438548(-) m6A 3'UTR       27773535
chr12:48438582-48438583(-) m6A 3'UTR       27773535
chr12:48438587-48438588(-) m6A 3'UTR       27773535
chr12:48438639-48438640(-) m6A 3'UTR       24981863//27773535
chr12:48438665-48438666(-) m6A 3'UTR       27773535
chr12:48438684-48438685(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr12:48438784-48438785(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085
chr12:48438858-48438859(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr12:48438881-48438882(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr12:48438908-48438909(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr12:48438984-48438985(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr12:48439029-48439030(-) m6A 3'UTR       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr12:48439038-48439039(-) m6A 3'UTR       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr12:48439066-48439067(-) m6A 3'UTR       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr12:48439084-48439085(-) m6A 3'UTR       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr12:48439101-48439102(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085
chr12:48439113-48439114(-) m6A 3'UTR//CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr12:48440156-48440157(-) m6A 3'UTR//CDS       24284625//24981863
chr12:48440160-48440161(-) m6A 3'UTR//CDS       24209618//24981863
chr12:48448689-48448690(-) m6A intron       27773535
chr12:48448800-48448801(-) m6A intron       24284625//24981863//27773535//22575960//22608085
chr12:48448841-48448842(-) m6A intron       24284625//24981863//27773535//22575960//22608085
chr12:48448894-48448895(-) m6A intron       24284625//24981863//27773535//22575960//22608085
chr12:48449029-48449030(-) m6A intron       24284625//27773535//22608085
chr12:48449225-48449226(-) m6A intron       24284625//25456834//27773535//22608085
chr12:48468257-48468258(-) m6A 3'UTR//CDS       27773535
chr12:48468351-48468352(-) m6A 3'UTR//CDS       24981863
chr12:48468498-48468499(-) m6A 3'UTR//CDS       24981863
chr12:48468516-48468517(-) m6A 3'UTR//CDS       24981863
chr12:48468543-48468544(-) m6A 3'UTR//CDS       24981863
chr12:48499548-48499549(-) m6A 5'UTR//intron       27773536
chr12:48499840-48499841(-) m6A 5'UTR//exon       27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SENP1
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells|K562 cells     -
Ribosome-free cytosol Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BHRF1-3
Interactor2: SENP1

Evidence Support:


Prediction-Evidence miRanda//PITA//Targetscan
Support Database VmiReg

Starting a new search, please wait ...