Detail Information

Basic Information:


  VIRBase ID:  

VHID00287615

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BHRF1-3:           SMNDC1:      

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Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BHRF1-3 SMNDC1
miRBase
Accession/Entrez ID		 MIMAT0000998 10285
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - SMNR//SPF30//TDRD16C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SMNDC1
chr10:112055672(-) A-I      intronic
chr10:112055667(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SMNDC1
chr10:112053898-112053899(-) m6A 3'UTR       24981863//27773535//22608085
chr10:112053967-112053968(-) m6A CDS       24284625//24981863//27773535//27371828//22608085
chr10:112053987-112053988(-) m6A CDS       24284625//24981863//27773535//27371828//22608085
chr10:112054998-112054999(-) m6A CDS//exon       24284625//24981863//28052920//26404942//27773535//27371828//22608085
chr10:112055046-112055047(-) m6A CDS//exon       24981863//28052920//27773535//27371828//22608085
chr10:112055066-112055067(-) m6A CDS//exon       24981863//27773535//27371828//22608085
chr10:112057335-112057336(-) m6A CDS//exon       24981863//28052920//27773535//22608085
chr10:112057348-112057349(-) m6A CDS//exon       24981863//28052920//27773535//22608085
chr10:112057369-112057370(-) Am CDS//exon       -
chr10:112057369-112057370(-) m1A CDS//exon       26863196
chr10:112057387-112057388(-) m6A CDS//exon       24981863//27773535
chr10:112064632-112064633(-) m6A 5'UTR//exon       24981863//27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SMNDC1
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleoplasm K562 cells     -
Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BHRF1-3
Interactor2: SMNDC1

Evidence Support:


Prediction-Evidence miRanda//PITA
Support Database VmiReg

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