Detail Information

Basic Information:


  VIRBase ID:  

VHID00287517

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.6002

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BHRF1-3:           SLC16A6:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BHRF1-3 SLC16A6
miRBase
Accession/Entrez ID		 MIMAT0000998 9120
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - MCT6//MCT7

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SLC16A6
chr17:66274453(-) A-I      Syn:Gln->Gln
chr17:66279871(-) A-I      intronic
chr17:66274653(-) A-I      intronic
chr17:66281641(-) A-I      intronic
chr17:66281567(-) A-I      intronic
chr17:66281555(-) A-I      intronic
chr17:66279897(-) A-I      intronic
chr17:66273369(-) A-I      intronic
chr17:66273420(-) A-I      intronic
chr17:66273428(-) A-I      intronic
chr17:66273436(-) A-I      intronic
chr17:66283324(-) A-I      intronic
chr17:66283289(-) A-I      intronic
chr17:66273370(-) A-I      intronic
chr17:66282784(-) A-I      intronic
chr17:66282783(-) A-I      intronic
chr17:66282729(-) A-I      intronic
chr17:66282688(-) A-I      intronic
chr17:66271924(-) A-I      intronic
chr17:66281628(-) A-I      intronic
chr17:66275036(-) A-I      intronic
chr17:66277099(-) A-I      intronic
chr17:66281728(-) A-I      intronic
chr17:66281568(-) A-I      intronic
chr17:66277103(-) A-I      intronic
chr17:66281586(-) A-I      intronic
chr17:66282173(-) A-I      intronic
chr17:66277119(-) A-I      intronic
chr17:66277129(-) A-I      intronic
chr17:66277145(-) A-I      intronic
chr17:66277616(-) A-I      intronic
chr17:66282038(-) A-I      intronic
chr17:66282828(-) A-I      intronic
chr17:66281595(-) A-I      intronic
chr17:66281964(-) A-I      intronic
chr17:66279340(-) A-I      intronic
chr17:66279405(-) A-I      intronic
chr17:66279411(-) A-I      intronic
chr17:66279417(-) A-I      intronic
chr17:66279703(-) A-I      intronic
chr17:66279751(-) A-I      intronic
chr17:66279759(-) A-I      intronic
chr17:66281748(-) A-I      intronic
chr17:66281754(-) A-I      intronic
chr17:66281654(-) A-I      intronic
chr17:66283348(-) A-I      intronic
chr17:66284346(-) A-I      intronic
chr17:66285270(-) A-I      intronic
chr17:66279177(-) A-I      5'UTR
chr17:66283340(-) A-I      intronic
chr17:66283339(-) A-I      intronic
chr17:66282722(-) A-I      intronic
chr17:66271953(-) A-I      intronic
chr17:66271955(-) A-I      intronic
chr17:66271975(-) A-I      intronic
chr17:66272000(-) A-I      intronic
chr17:66272012(-) A-I      intronic
chr17:66272037(-) A-I      intronic
chr17:66272041(-) A-I      intronic
chr17:66272072(-) A-I      intronic
chr17:66273335(-) A-I      intronic
chr17:66273345(-) A-I      intronic
chr17:66273397(-) A-I      intronic
chr17:66273409(-) A-I      intronic
chr17:66273663(-) A-I      intronic
chr17:66273735(-) A-I      intronic
chr17:66274898(-) A-I      intronic
chr17:66279319(-) A-I      intronic
chr17:66279051(-) A-I      intronic
chr17:66279043(-) A-I      intronic
chr17:66278981(-) A-I      intronic
chr17:66277709(-) A-I      intronic
chr17:66277259(-) A-I      intronic
chr17:66277245(-) A-I      intronic
chr17:66277086(-) A-I      intronic
chr17:66274957(-) A-I      intronic
chr17:66282883(-) A-I      intronic
chr17:66274943(-) A-I      intronic
chr17:66282854(-) A-I      intronic
chr17:66282917(-) A-I      intronic
chr17:66282839(-) A-I      intronic
chr17:66282809(-) A-I      intronic
chr17:66282924(-) A-I      intronic
chr17:66282714(-) A-I      intronic
chr17:66281891(-) A-I      intronic
chr17:66281880(-) A-I      intronic
chr17:66274934(-) A-I      intronic
chr17:66274714(-) A-I      intronic
chr17:66273747(-) A-I      intronic
chr17:66273744(-) A-I      intronic
chr17:66281878(-) A-I      intronic
chr17:66283201(-) A-I      intronic
chr17:66271866(-) A-I      intronic
chr17:66283500(-) A-I      intronic
chr17:66283509(-) A-I      intronic
chr17:66285269(-) A-I      intronic
chr17:66285284(-) A-I      intronic
chr17:66285321(-) A-I      intronic
chr17:66281725(-) A-I      intronic
chr17:66281716(-) A-I      intronic
chr17:66281687(-) A-I      intronic
chr17:66281645(-) A-I      intronic
chr17:66281569(-) A-I      intronic
chr17:66280402(-) A-I      intronic
chr17:66280394(-) A-I      intronic
chr17:66280339(-) A-I      intronic
chr17:66279978(-) A-I      intronic
chr17:66279943(-) A-I      intronic
chr17:66285370(-) A-I      intronic
chr17:66279919(-) A-I      intronic
chr17:66285401(-) A-I      intronic
chr17:66279227(-) A-I      5'UTR
chr17:66279168(-) A-I      5'UTR
chr17:66277564(-) A-I      intronic
chr17:66277215(-) A-I      intronic
chr17:66282888(-) A-I      intronic
chr17:66281759(-) A-I      intronic
chr17:66281765(-) A-I      intronic
chr17:66279796(-) A-I      intronic
chr17:66281662(-) A-I      intronic
chr17:66274940(-) A-I      intronic
chr17:66281663(-) A-I      intronic
chr17:66279468(-) A-I      intronic
chr17:66278695(-) A-I      intronic
chr17:66274821(-) A-I      intronic
chr17:66277223(-) A-I      intronic
chr17:66279717(-) A-I      intronic
chr17:66274988(-) A-I      intronic
chr17:66273346(-) A-I      intronic
chr17:66274829(-) A-I      intronic
chr17:66279163(-) A-I      5'UTR
chr17:66280420(-) A-I      intronic
chr17:66277230(-) A-I      intronic
chr17:66277123(-) A-I      intronic
chr17:66273808(-) A-I      intronic
chr17:66285266(-) A-I      intronic
chr17:66270524(-) A-I      intronic
chr17:66282105(-) A-I      intronic
chr17:66272002(-) A-I      intronic
chr17:66285398(-) A-I      intronic
chr17:66285377(-) A-I      intronic
chr17:66277229(-) A-I      intronic
chr17:66281648(-) A-I      intronic
chr17:66274899(-) A-I      intronic
chr17:66277100(-) A-I      intronic
chr17:66283580(-) A-I      intronic
chr17:66282873(-) A-I      intronic
chr17:66277236(-) A-I      intronic
chr17:66277680(-) A-I      intronic
chr17:66270521(-) A-I      intronic
chr17:66277678(-) A-I      intronic
chr17:66283167(-) A-I      intronic
chr17:66279352(-) A-I      intronic
chr17:66270525(-) A-I      intronic
chr17:66277730(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SLC16A6
chr17:66270521(-) A-I intron -    15258596
chr17:66270524(-) A-I intron -    15258596
chr17:66270525(-) A-I intron -    15258596
chr17:66265162(-) C-T exon 3'UTR    21725310

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SLC16A6
chr17:66263460-66263461(-) m6A 3'UTR       22575960
chr17:66264907-66264908(-) m6A 3'UTR       27773535
chr17:66264947-66264948(-) m6A 3'UTR       27773535
chr17:66265015-66265016(-) m6A 3'UTR       27773535
chr17:66265022-66265023(-) m6A 3'UTR       27773535
chr17:66265172-66265173(-) m6A 3'UTR       24284625
chr17:66265377-66265378(-) m6A CDS       24284625
chr17:66265392-66265393(-) m6A CDS       24284625
chr17:66265474-66265475(-) m6A CDS       24284625
chr17:66266992-66266993(-) m6A CDS       24284625//27773535//22575960//22608085
chr17:66267001-66267002(-) m6A CDS       24284625//27773535//22575960//22608085
chr17:66267096-66267097(-) m6A CDS       24284625//24981863//27773535//22575960//22608085
chr17:66267108-66267109(-) m6A CDS       24284625//24981863//27773535//22575960//22608085
chr17:66267320-66267321(-) m6A CDS       24284625//27773535//22575960//22608085
chr17:66267446-66267447(-) m6A CDS       24284625//24981863//27773535//22575960//22608085
chr17:66267486-66267487(-) m6A CDS       24284625//24981863//27773535//22575960//22608085
chr17:66267526-66267527(-) m6A CDS       24284625//24981863//27773535//22575960//22608085
chr17:66267571-66267572(-) m6A CDS       24284625//24981863//27773535//22575960//22608085
chr17:66267593-66267594(-) m6A CDS       24284625//24981863//27773535//22575960//22608085
chr17:66267603-66267604(-) m6A CDS       24284625//24981863//27773535//22575960//22608085
chr17:66267609-66267610(-) m6A CDS       24284625//24981863//27773535//22575960//22608085
chr17:66267679-66267680(-) m6A CDS       24284625//24981863//27773535//22575960//22608085
chr17:66267697-66267698(-) m6A CDS       24284625//24981863//27773535//22575960//22608085
chr17:66267725-66267726(-) m6A CDS       24284625//27773535//22575960
chr17:66279824-66279825(-) Y intron       16381836

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SLC16A6
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BHRF1-3
Interactor2: SLC16A6

Evidence Support:


Weak-Evidence PAR-CLIP
Prediction-Evidence miRanda//PARalyzer//Targetscan
Support Database ViRBase//VIRmiRNA//VmiReg

References:


PMID 22291592 Target region 3'UTR
Source ViRBase//VIRmiRNA//VmiReg Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7,827 miRNA-interaction sites in 3,492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.We identified an additional 2,972 CDS miRNA-interaction sites present in at least two libraries, 89.7% of which could be assigned to a miRNA (Table S7).

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