Basic Information:

  VIRBase ID:  

VHID00287454

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.6040

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BHRF1-3:  MIMAT0000998          ZNF202:  NM_001301779     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BHRF1-3	ZNF202
miRBase Accession/Entrez ID	MIMAT0000998	7753
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	ZKSCAN10//ZSCAN42

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ZNF202	chr11:123595132-123595133(-) m6A 3'UTR       27773535 chr11:123595191-123595192(-) m6A 3'UTR       27773535 chr11:123595327-123595328(-) m6A 3'UTR       27773535//22608085 chr11:123595360-123595361(-) m6A 3'UTR       27773535 chr11:123595525-123595526(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr11:123595532-123595533(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr11:123595596-123595597(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr11:123595605-123595606(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr11:123595645-123595646(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr11:123595665-123595666(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085 chr11:123595737-123595738(-) m6A 3'UTR       24284625//24981863//27773535//22608085 chr11:123596031-123596032(-) m6A 3'UTR       24284625//25456834//24981863//27773535//22608085 chr11:123596082-123596083(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr11:123596233-123596234(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr11:123596240-123596241(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr11:123596321-123596322(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr11:123596356-123596357(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr11:123596414-123596415(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr11:123596422-123596423(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr11:123596539-123596540(-) m6A 3'UTR       24284625//24981863//27773535//22608085 chr11:123596556-123596557(-) m6A 3'UTR       27773535//22608085 chr11:123596617-123596618(-) m6A 3'UTR       22608085 chr11:123596712-123596713(-) m6A CDS       24981863//22608085 chr11:123596727-123596728(-) m6A CDS       24981863//22608085 chr11:123596794-123596795(-) m6A CDS       24981863//27773536//22608085 chr11:123596811-123596812(-) m6A CDS       24981863//27773536//22608085 chr11:123596834-123596835(-) m6A CDS       24981863//27371828//27773536//22608085 chr11:123596893-123596894(-) m6A CDS       25456834//24981863//27371828//27773536//22608085 chr11:123596962-123596963(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//22575960//22608085 chr11:123597007-123597008(-) m6A CDS       24284625//25456834//24981863//27773535//22575960//22608085 chr11:123597017-123597018(-) m6A CDS       24284625//25456834//24981863//27773535//22575960//22608085 chr11:123597046-123597047(-) m6A CDS       24284625//25456834//24981863//27773535//22575960//22608085 chr11:123597130-123597131(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//22575960//22608085 chr11:123597147-123597148(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//22575960//22608085 chr11:123597157-123597158(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//22575960//22608085 chr11:123597167-123597168(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//22575960//22608085 chr11:123597174-123597175(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//22575960//22608085 chr11:123597214-123597215(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//22575960//22608085 chr11:123597231-123597232(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr11:123597258-123597259(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22575960//22608085 chr11:123597278-123597279(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22575960//22608085 chr11:123597382-123597383(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr11:123597399-123597400(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr11:123597409-123597410(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr11:123597495-123597496(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr11:123597506-123597507(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr11:123597559-123597560(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr11:123597572-123597573(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22608085 chr11:123597600-123597601(-) m6A CDS       24209618//25456834//24981863//27773535//22608085 chr11:123597616-123597617(-) m6A CDS       24209618//25456834//24981863//27773535//22608085 chr11:123598219-123598220(-) m6A CDS       27773535 chr11:123598967-123598968(-) m6A CDS       27371828 chr11:123599870-123599871(-) m6A CDS       27371828 chr11:123599897-123599898(-) m6A CDS       27371828 chr11:123599903-123599904(-) m6A CDS       27371828 chr11:123600337-123600338(-) m6A CDS       24284625//27371828//27773536 chr11:123600403-123600404(-) m6A CDS       24284625//27773535//27371828//27773536 chr11:123601206-123601207(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//27773536//22608085 chr11:123601218-123601219(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//27773536//22608085 chr11:123601293-123601294(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr11:123601320-123601321(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr11:123601355-123601356(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr11:123601368-123601369(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr11:123601389-123601390(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr11:123601398-123601399(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr11:123601453-123601454(-) m6A CDS       24284625//25456834//27773535//27371828//27773536//22608085 chr11:123601466-123601467(-) m6A CDS       24284625//25456834//27773535//27371828//27773536//22608085 chr11:123601530-123601531(-) m6A CDS//exon       27773535 chr11:123601570-123601571(-) m6A CDS//exon       24284625//25456834//24981863//27773535 chr11:123601578-123601579(-) m6A CDS//exon       24284625//25456834//24981863//27773535 chr11:123601614-123601615(-) m6A 5'UTR//exon       24284625//25456834//24981863//27773535 chr11:123609447-123609448(-) m6A exon//intron       27773535//22608085 chr11:123609490-123609491(-) m6A exon//intron       27773535//22608085 chr11:123609530-123609531(-) m6A exon//intron       27773535//22608085 chr11:123609605-123609606(-) m6A exon//intron       22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ZNF202	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus Colon cancer cells     24393600 Nucleus HCC cell line (HepG2)|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BHRF1-3
Interactor2: ZNF202

Evidence Support:

Weak-Evidence	PAR-CLIP
Prediction-Evidence	miRanda//PARalyzer//PITA//Targetscan
Support Database	ViRBase//VIRmiRNA//VmiReg

References:

PMID	22291592	Target region	3'UTR
Source	ViRBase//VIRmiRNA//VmiReg	Interactor1 expression	None
Tissue or cell line	EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells	Interactor2 expression	None
Description	We identified 7,827 miRNA-interaction sites in 3,492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.We identified an additional 2,972 CDS miRNA-interaction sites present in at least two libraries, 89.7% of which could be assigned to a miRNA (Table S7).