Detail Information

Basic Information:


  VIRBase ID:  

VHID00286037

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BHRF1-2-3p:           USP44:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BHRF1-2-3p USP44
miRBase
Accession/Entrez ID		 MIMAT0000997 84101
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR USP44
chr12:95936455(-) A-I      intronic
chr12:95936438(-) A-I      intronic
chr12:95936354(-) A-I      intronic
chr12:95924678(-) A-I      intronic
chr12:95924684(-) A-I      intronic
chr12:95917755(-) A-I      intronic
chr12:95926223(-) A-I      intronic
chr12:95916472(-) A-I      intronic
chr12:95917750(-) A-I      intronic
chr12:95924828(-) A-I      intronic
chr12:95924698(-) A-I      intronic
chr12:95929924(-) A-I      intronic
chr12:95924715(-) A-I      intronic
chr12:95924696(-) A-I      intronic
chr12:95920123(-) A-I      intronic
chr12:95920105(-) A-I      intronic
chr12:95920104(-) A-I      intronic
chr12:95918137(-) A-I      intronic
chr12:95918131(-) A-I      intronic
chr12:95917758(-) A-I      intronic
chr12:95916311(-) A-I      intronic
chr12:95915552(-) A-I      intronic
chr12:95920968(-) A-I      intronic
chr12:95918259(-) A-I      intronic
chr12:95926112(-) A-I      intronic
chr12:95918190(-) A-I      intronic
chr12:95918034(-) A-I      intronic
chr12:95915316(-) A-I      intronic
chr12:95913753(-) A-I      intronic
chr12:95919110(-) A-I      intronic
chr12:95916310(-) A-I      intronic
chr12:95935913(-) A-I      intronic
chr12:95929973(-) A-I      intronic
chr12:95920976(-) A-I      intronic
chr12:95918028(-) A-I      intronic
chr12:95918205(-) A-I      intronic
chr12:95935845(-) A-I      intronic
chr12:95935932(-) A-I      intronic
chr12:95937136(-) A-I      intronic
chr12:95930061(-) A-I      intronic
chr12:95930069(-) A-I      intronic
chr12:95913778(-) A-I      intronic
chr12:95913770(-) A-I      intronic
chr12:95926081(-) A-I      intronic
chr12:95934400(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase USP44
chr12:95911857-95911858(-) m6A 3'UTR       24981863
chr12:95911875-95911876(-) m6A 3'UTR       25456834//24981863//22608085
chr12:95911921-95911922(-) m6A 3'UTR       25456834//24981863//27371828//22608085
chr12:95912010-95912011(-) m6A 3'UTR//CDS       25456834//24981863//27371828//22608085
chr12:95912019-95912020(-) m6A 3'UTR//CDS       25456834//24981863//27371828//22608085
chr12:95912100-95912101(-) m6A 3'UTR//CDS       25456834//24981863//22608085
chr12:95926619-95926620(-) m6A CDS       24981863//22608085
chr12:95926655-95926656(-) m6A CDS       24981863//22608085
chr12:95926664-95926665(-) m6A CDS       24981863//22608085
chr12:95926711-95926712(-) m6A CDS       24981863//22608085
chr12:95926742-95926743(-) m6A CDS       24981863//22608085
chr12:95926799-95926800(-) m6A CDS       24981863//22608085
chr12:95926931-95926932(-) m6A CDS       25456834//24981863//27371828//22608085
chr12:95926967-95926968(-) m6A CDS       25456834//24981863//27371828//22608085
chr12:95926988-95926989(-) m6A CDS       25456834//24981863//27371828//22608085
chr12:95927080-95927081(-) m6A CDS       24981863//22608085
chr12:95927112-95927113(-) m6A CDS       24981863//22608085
chr12:95927498-95927499(-) m6A CDS       24981863//22608085
chr12:95927531-95927532(-) m6A CDS       24981863//22608085
chr12:95927542-95927543(-) m6A CDS       24981863//22608085
chr12:95927751-95927752(-) m6A CDS       22608085
chr12:95927940-95927941(-) m6A CDS       25456834//24981863//27371828//22608085
chr12:95927979-95927980(-) m6A CDS       25456834//24981863//27371828//22608085
chr12:95928008-95928009(-) m6A CDS       25456834//24981863//27371828//22608085
chr12:95928040-95928041(-) m6A 5'UTR       25456834//24981863//27371828//22608085
chr12:95928070-95928071(-) m6A 5'UTR       25456834//24981863//27371828//22608085
chr12:95928076-95928077(-) m6A 5'UTR       25456834//24981863//27371828//22608085
chr12:95942498-95942499(-) m6A 5'UTR//intron       27371828
chr12:95945068-95945069(-) m6A 5'UTR       25456834//24981863
chr12:95945107-95945108(-) m6A 5'UTR       25456834//24981863
chr12:95945126-95945127(-) m6A 5'UTR       25456834//24981863
chr12:95945164-95945165(-) m6A 5'UTR       25456834//24981863
chr12:95945222-95945223(-) m6A 5'UTR       25456834

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ebv-miR-BHRF1-2-3p
Exosome K562 cells     24460325
USP44
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BHRF1-2-3p
Interactor2: USP44

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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