Basic Information:

  VIRBase ID:  

VHID00284681

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BHRF1-2-3p:  MIMAT0000997          SNRNP27:  NR_037862     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BHRF1-2-3p	SNRNP27
miRBase Accession/Entrez ID	MIMAT0000997	11017
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	27K//RY1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SNRNP27	chr2:70127834(+) A-I      intronic chr2:70128894(+) A-I      intronic chr2:70128777(+) A-I      intronic chr2:70128863(+) A-I      intronic chr2:70128225(+) A-I      intronic chr2:70128709(+) A-I      intronic chr2:70130178(+) A-I      intronic chr2:70128762(+) A-I      intronic chr2:70130175(+) A-I      intronic chr2:70127000(+) A-I      intronic chr2:70128868(+) A-I      intronic chr2:70130225(+) A-I      intronic chr2:70127048(+) A-I      intronic chr2:70128859(+) A-I      intronic chr2:70128791(+) A-I      intronic chr2:70127190(+) A-I      intronic chr2:70127171(+) A-I      intronic chr2:70128832(+) A-I      intronic chr2:70128054(+) A-I      intronic chr2:70122023(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SNRNP27	chr2:70127000(+) A-G intron -    22484847 chr2:70128054(+) A-G intron -    22484847 chr2:70128845(+) C-T intron -    22484847 chr2:70128859(+) A-G intron -    22484847 chr2:70130178(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SNRNP27	chr2:70121109-70121110(+) m6A 5'UTR       24284625//25456834//24981863//22608085 chr2:70123643-70123644(+) m6A CDS       24981863//27773535//22608085 chr2:70123652-70123653(+) m6A CDS//exon       24981863//27773535//22608085 chr2:70124514-70124515(+) m6A CDS//exon       24981863//27773535//22608085 chr2:70124528-70124529(+) m6A CDS//exon       24981863//27773535//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ebv-miR-BHRF1-2-3p	Exosome K562 cells     24460325
	SNRNP27	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleoplasm K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BHRF1-2-3p
Interactor2: SNRNP27

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg