Detail Information

Basic Information:


  VIRBase ID:  

VHID00283080

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BHRF1-2-5p:           TMEM170B:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BHRF1-2-5p TMEM170B
miRBase
Accession/Entrez ID
MIMAT0000996 100113407
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TMEM170B
chr6:11549623(+) A-I      intronic
chr6:11546053(+) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TMEM170B
chr6:11538598-11538599(+) m6A CDS       24284625
chr6:11575702-11575703(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085
chr6:11575739-11575740(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085
chr6:11575829-11575830(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085
chr6:11575896-11575897(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085
chr6:11575922-11575923(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085
chr6:11576019-11576020(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085
chr6:11578673-11578674(+) m6A 3'UTR       24981863//22608085
chr6:11578688-11578689(+) m6A 3'UTR       24981863//22608085
chr6:11578741-11578742(+) m6A 3'UTR       24981863//22608085
chr6:11578760-11578761(+) m6A 3'UTR       22608085
chr6:11578777-11578778(+) m6A 3'UTR       22608085
chr6:11578793-11578794(+) m6A 3'UTR       22608085
chr6:11578801-11578802(+) m6A 3'UTR       22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ebv-miR-BHRF1-2-5p
Exosome B cell line (Raji)     21505438
TMEM170B
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Exosome Blood     -
Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BHRF1-2-5p
Interactor2: TMEM170B

Evidence Support:


Prediction-Evidence miRanda//PITA//Targetscan
Support Database VmiReg

Starting a new search, please wait ...