Basic Information:

  VIRBase ID:  

VHID00283041

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BHRF1-2-5p:  MIMAT0000996          RBMXL1:  NM_001162536     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BHRF1-2-5p	RBMXL1
miRBase Accession/Entrez ID	MIMAT0000996	494115
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	RBM1

RNA Editing:

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	RBMXL1	chr1:89448817(-) A-I exon CDS    22327324 chr1:89448913(-) A-I exon CDS    22327324

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RBMXL1	chr1:89447650-89447651(-) m6A 3'UTR       27773535 chr1:89447686-89447687(-) m6A 3'UTR       24981863//27773535 chr1:89447706-89447707(-) m6A 3'UTR       24981863//27773535 chr1:89447733-89447734(-) m6A 3'UTR       27773535 chr1:89448049-89448050(-) m6A 3'UTR       27773535 chr1:89448162-89448163(-) m6A 3'UTR       27773535//22608085 chr1:89448252-89448253(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr1:89448277-89448278(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr1:89448295-89448296(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr1:89448317-89448318(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr1:89448324-89448325(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr1:89448333-89448334(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr1:89448480-89448481(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr1:89448535-89448536(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085 chr1:89448856-89448857(-) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr1:89448918-89448919(-) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr1:89449002-89449003(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22608085 chr1:89449053-89449054(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22608085 chr1:89449074-89449075(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22608085 chr1:89449128-89449129(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:89449146-89449147(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:89449154-89449155(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:89449224-89449225(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:89449230-89449231(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:89449251-89449252(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:89449263-89449264(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:89449306-89449307(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:89449376-89449377(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:89449384-89449385(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:89449433-89449434(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:89449454-89449455(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22608085 chr1:89449547-89449548(-) m6A 5'UTR//exon       24284625//27773535//22608085 chr1:89453975-89453976(-) m6A 5'UTR//exon//intron       24981863 chr1:89458304-89458305(-) m6A 5'UTR//exon       25456834//24981863//27371828 chr1:89458382-89458383(-) m6A 5'UTR//exon       25456834//24981863//27371828 chr1:89458455-89458456(-) m6A 5'UTR       25456834//24981863//27371828 chr1:89458489-89458490(-) m6A 5'UTR       25456834//24981863//27371828

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ebv-miR-BHRF1-2-5p	Exosome B cell line (Raji)     21505438
	RBMXL1	Exosome Blood     - Nucleus Colon cancer cells     24393600 Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BHRF1-2-5p
Interactor2: RBMXL1

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg