Detail Information

Basic Information:


  VIRBase ID:  

VHID00282793

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BHRF1-2-5p:           THSD7A:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BHRF1-2-5p THSD7A
miRBase
Accession/Entrez ID		 MIMAT0000996 221981
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR THSD7A
chr7:11837981(-) A-I      intronic
chr7:11838064(-) A-I      intronic
chr7:11801822(-) A-I      intronic
chr7:11812220(-) A-I      intronic
chr7:11787764(-) A-I      intronic
chr7:11838066(-) A-I      intronic
chr7:11866738(-) A-I      intronic
chr7:11838681(-) A-I      intronic
chr7:11838646(-) A-I      intronic
chr7:11427573(-) A-I      intronic
chr7:11838645(-) A-I      intronic
chr7:11837145(-) A-I      intronic
chr7:11837135(-) A-I      intronic
chr7:11449518(-) A-I      intronic
chr7:11449516(-) A-I      intronic
chr7:11449507(-) A-I      intronic
chr7:11449494(-) A-I      intronic
chr7:11837119(-) A-I      intronic
chr7:11837126(-) A-I      intronic
chr7:11837140(-) A-I      intronic
chr7:11427572(-) A-I      intronic
chr7:11427571(-) A-I      intronic
chr7:11427559(-) A-I      intronic
chr7:11427557(-) A-I      intronic
chr7:11427536(-) A-I      intronic
chr7:11427524(-) A-I      intronic
chr7:11837181(-) A-I      intronic
chr7:11837167(-) A-I      intronic
chr7:11813070(-) A-I      intronic
chr7:11837110(-) A-I      intronic
chr7:11866376(-) A-I      intronic
chr7:11838673(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase THSD7A
chr7:11410090-11410091(-) m6A 3'UTR       27773535
chr7:11411549-11411550(-) m6A 3'UTR       24981863//27773535
chr7:11411663-11411664(-) m6A 3'UTR       24981863//27773535
chr7:11411729-11411730(-) m6A 3'UTR       27773535
chr7:11413561-11413562(-) m6A 3'UTR       24981863
chr7:11413583-11413584(-) m6A 3'UTR       24981863
chr7:11413606-11413607(-) m6A 3'UTR       24981863
chr7:11413838-11413839(-) m6A 3'UTR       24981863
chr7:11413928-11413929(-) m6A 3'UTR       24981863
chr7:11413944-11413945(-) m6A 3'UTR       24981863
chr7:11413976-11413977(-) m6A 3'UTR       24981863
chr7:11414016-11414017(-) m6A 3'UTR       24981863
chr7:11414516-11414517(-) m6A 3'UTR//exon       24981863//27773535
chr7:11414542-11414543(-) m6A 3'UTR//exon       24981863//27773535
chr7:11414568-11414569(-) m6A 3'UTR//exon       24981863//27773535
chr7:11414662-11414663(-) m6A 3'UTR//exon       24981863//27773535
chr7:11414713-11414714(-) m6A 3'UTR//exon       24981863//27773535
chr7:11414781-11414782(-) m6A 3'UTR//exon       24981863//27773535
chr7:11414814-11414815(-) m6A 3'UTR//exon       24981863//27773535
chr7:11414833-11414834(-) m6A 3'UTR//exon       24981863//27773535
chr7:11414916-11414917(-) m6A 3'UTR//exon       24981863//27773535
chr7:11415054-11415055(-) m6A 3'UTR//exon       24981863//27773535
chr7:11415079-11415080(-) m6A 3'UTR//exon       24981863//27773535
chr7:11415138-11415139(-) m6A 3'UTR//exon       24981863//27773535
chr7:11415232-11415233(-) m6A 3'UTR//exon       24981863//27773535
chr7:11415252-11415253(-) m6A 3'UTR//exon       24981863//27773535
chr7:11415291-11415292(-) m6A 3'UTR//exon       24981863//27773535
chr7:11415340-11415341(-) m6A 3'UTR//exon       24981863//27773535
chr7:11415459-11415460(-) m6A CDS//exon       24981863//27773535
chr7:11415472-11415473(-) m6A CDS//exon       24981863//27773535
chr7:11415489-11415490(-) m6A CDS//exon       24981863//27773535
chr7:11416269-11416270(-) m6A CDS//exon       27773535
chr7:11416276-11416277(-) m6A CDS//exon       27773535
chr7:11485708-11485709(-) m6A CDS       24981863//27773535
chr7:11485766-11485767(-) m6A CDS       24981863//27773535
chr7:11485782-11485783(-) m6A CDS       24981863//27773535
chr7:11485839-11485840(-) m6A CDS       24981863//27773535
chr7:11485848-11485849(-) m6A CDS       24981863//27773535
chr7:11485894-11485895(-) m6A CDS       24981863//27773535
chr7:11486877-11486878(-) m6A CDS//exon       24981863
chr7:11633028-11633029(-) m6A CDS       27773535
chr7:11675805-11675806(-) m6A CDS       24981863//27773535
chr7:11675825-11675826(-) m6A CDS       24981863//27773535
chr7:11675837-11675838(-) m6A CDS       24981863//27773535
chr7:11675849-11675850(-) m6A CDS       24981863//27773535
chr7:11675858-11675859(-) m6A CDS       24981863//27773535
chr7:11675864-11675865(-) m6A CDS       24981863//27773535
chr7:11675921-11675922(-) m6A CDS       24981863//27773535
chr7:11675962-11675963(-) m6A CDS       24981863//27773535
chr7:11676153-11676154(-) m6A CDS       27773535
chr7:11676281-11676282(-) m6A CDS//exon       24981863//27773535
chr7:11676287-11676288(-) m6A CDS//exon       24981863//27773535
chr7:11676352-11676353(-) m6A CDS//exon       24981863//26404942//27773535
chr7:11676397-11676398(-) m6A CDS//exon       24981863//26404942//27773535
chr7:11676403-11676404(-) m6A CDS//exon       24981863//26404942//27773535
chr7:11676466-11676467(-) m6A CDS//exon       24981863//27773535
chr7:11676501-11676502(-) m6A CDS//exon       24981863//27773535
chr7:11790808-11790809(-) m6A exon//intron       24981863//27773535
chr7:11859967-11859968(-) m6A intron       27773535
chr7:11859982-11859983(-) m6A intron       27773535
chr7:11859989-11859990(-) m6A intron       27773535
chr7:11860143-11860144(-) m6A intron       27773535
chr7:11860161-11860162(-) m6A intron       27773535
chr7:11860197-11860198(-) m6A intron       24981863
chr7:11860218-11860219(-) m6A intron       24981863
chr7:11860251-11860252(-) m6A intron       24981863
chr7:11860305-11860306(-) m6A intron       24981863//27773535
chr7:11860312-11860313(-) m6A intron       24981863//27773535
chr7:11860320-11860321(-) m6A intron       24981863//27773535
chr7:11860356-11860357(-) m6A intron       24981863//27773535
chr7:11860473-11860474(-) m6A intron       27773535
chr7:11860480-11860481(-) m6A intron       27773535
chr7:11860515-11860516(-) m6A intron       27773535
chr7:11871594-11871595(-) m6A 5'UTR       25456834//24981863
chr7:11871687-11871688(-) m6A 5'UTR       25456834//24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ebv-miR-BHRF1-2-5p
Exosome B cell line (Raji)     21505438
THSD7A
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BHRF1-2-5p
Interactor2: THSD7A

Evidence Support:


Prediction-Evidence miRanda//PITA//Targetscan
Support Database VmiReg

Starting a new search, please wait ...